Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SCD1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49040 1810 / 0 SCD1 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) AT3G49660 89 / 1e-18 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 85 / 2e-17 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 83 / 1e-16 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G18860 84 / 3e-16 transducin family protein / WD-40 repeat family protein (.1.2) AT4G15900 83 / 4e-16 PRL1 pleiotropic regulatory locus 1 (.1) AT5G08390 82 / 2e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 82 / 2e-15 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 80 / 1e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT2G21390 79 / 2e-14 Coatomer, alpha subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G060800 [exp] 2240 / 0 AT1G49040 1782 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.007G009500 [exp] 90 / 4e-19 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 93 / 6e-19 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 88 / 2e-18 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G150700 [exp] 91 / 3e-18 AT3G18860 1099 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.005G148500 [exp] 86 / 1e-17 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G112184 [exp] 87 / 3e-17 AT3G18860 1128 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.008G002300 [exp] 87 / 4e-17 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.T125104 [exp] 87 / 4e-17 AT3G18860 1114 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040449 [exp] 1992 / 0 AT1G49040 1816 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Lus10023563 [exp] 1914 / 0 AT1G49040 1743 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Lus10041007 [exp] 92 / 2e-18 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039636 [exp] 88 / 2e-18 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 87 / 5e-18 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10013452 [exp] 90 / 1e-17 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10014674 [exp] 85 / 3e-17 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 85 / 3e-17 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10002090 [exp] 84 / 5e-17 AT5G64730 525 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10040490 [exp] 86 / 1e-16 AT3G18860 1103 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0330 [poplar] [flax] AVL9 PF02141 [poplar] [flax] DENN DENN (AEX-3) domain CL0431 [poplar] [flax] PF PF03456 [poplar] [flax] uDENN uDENN domain
Representative CDS sequence Show only first row Show all	>Potri.015G049500.2 pacid=42775963 polypeptide=Potri.015G049500.2.p locus=Potri.015G049500 ID=Potri.015G049500.2.v4.1 annot-version=v4.1 ATGGCAGGGATCTTCGAGTATTTTGTAGTGTGTGGGTTGGGTCCGGAGATGAGAACTATGGATGGAAACAAAGGATATCATGGAATGCGAGTGTTGTATT TGCCTTCTCTACTCGATCAATATCCTCCAGATAATCACTGTCTTTATCCTCCGCCTCCTCCTCAACTCCCAACTTGTGTGCTTCCTGCTGGTGTGGAGTT TTACCCGTCAGGACTTGATGCAAATGATTCCTCCACATTTCCTAAAAGTTACCCCATTGTTTTGACTGAGGGTGATGGATCCAAAATTTATGTTAGTTGC ATTGCCTTTCGAGATCCAGTTAGCGAGGATATTGCTGAAGCTTACCGTATACCTCCAAATTCATTTGCTGACAAATGTATCTGCCTTGTTTCCCGCTCTC CTAGTTTTGGTGTTCTTAGAACTGCACTGGAGGAGTTATTTGCACTTTGCTTTTCCCCTGCTGGAAGTAGCAAGCCATTATGGGATGTTATATCATACAT GGTCTCCAATGTACCTTTGCCTACTCCTGGAAAGGATCGGGTCTTGTTTGCCATTGAGAATTGCCTGCTTTCTGTGGAGGCTCCACCCAAAGATGGACTC CCCCATGTTGAGATATCATTTCAGCCATTGGTACAGTGTTTGGATGTGGACAACTTGCTCAAACTTTTTACTGCCGTGTTGCTTGAAAGGAGGATTTTAC TTCGTTCCAACAAGTATTCACTTTTAACCCTAGCATCAGAGGCCATATGTCATTTGATTTATCCCCTTAGGTGGCAGCATGTCTACATTCCATTACTATT TTTCAGTGGAGTTGACTATATTGATGCTCCTACACCTTATATGATGGGTCTCCATTCAGCTGTTGATACATCTTACCTTGCAATGGATGGTGTAGTGGTT GTGGACCTTGAGTATAACCGAATTTGTACCTCAGAGGAAATACCCCCTATTCCAGAGCCAGAATTAAGTACCTTGCGGGGTGAGATACTGAAGCTATTGT ACCCCAATGTCATGGGAATAGATCAAATGAAAGCTGGTCTGGTTAGCTCATCTGAGCAATATTTTAAAGGCTGCAACAAGCCTTGGGGAGAAGATCATGA CCTTCAACTTAGGTTAATATTCCTAAAGTTCTTTGCATCCATTTTAGGTGGATACCGGAATTTCATTGAAAACACTGCAACTCATGCCTTCAACACTCAA GCATTTTTGAGGAAGCGCTCTCGGTCAACCAACCAACCACCAGATGCCATGATAACACAGTTCTTAGACTCCCATGGTTTCTTGGATTATTTGGAGAGAG TTATTGATTCTGATGAAAACAATTATAATCTTCTTGACAAGTTACAAGACGCAATTGGAAGGGGTCAGAATCCCATTTCAGTTCTCCCCTCTTCGTGGGT AGAGCCTGAAATTATAACCATATCAGATCCAGATGTTGGAATATTGGGATCAGGCGCTAAATTTACTTATGATAGGTTTCCCGCAAACATCAGGTCAGAA GAACATGAGGAGAAGAGGAAGCAAATTCTTGCAGCAGCAAGTGGGGCTTTTGATTACATAAAGCATACTCCTAGTTCACCGTCTGTGCAAGTGGGCAAGG ACTCTCTTAGTCCCATGGAGAGGGCTGCAGAAAGGGAGCGCATGGTTTTGGACATTAAAGTTAAGCTGCAGGGTTTGTGGCTGCGTCTTCTTAAACTAAG AGCCACTGATGATCCACTTTCATCTTTTGAATATGGCACTATCCTTGCACTGATTGAGTCTGATGCGGAGGGGATTGGTGGTAGTGGATTTGTTGAATGT ATAAGGGAGCATATACACTCAGGATGGCACTGTCAATTGACTGATGAGCAGTTTATTGCTGTGAAAGAACTGCTTAAAACAGCAATTAGTCGCGCAACCT CCAGGAATGATGTGTCAACCATTAGAGATGCCCTTGAAGTATCTGCTGAGATGTATAAAAGAGATGCTAATAATGTTTCTGACTATGTCCAGCGTCATCT TATTTCTCTGTCTATATGGGAGGAGCTACGGTTCTGGGAGGGGTACTTTGAGTATCTAATGGAGCATCCTTCAAGCAAGTCAGCCAATTATTCAGCTTTA GTAACAACACAACTAATTCTTGTGGCATTACACATGGCTGGATTGGGACTTCTTGATACTGATGCTTGGCACATGATTGAAACAATAGCAGAGAAGAATA ATATTGGATACAAGCAGTTTATAAAACTCAGAGGATTCTTGTCACACATCCAGCAAGTTCGTATCAGTTACTGGGGAATCTCTTCTGTAAAAGCCCAATC CATGCGATCTCCTGGATTGTCTTCCCCACGCCCAAAAGATTCTATGGATGAGAATGAGCAACCTGCAGAAGCTTCTGTTATTGGCAGGAGCTGGGTCCAA AGCATGTTTAGCAGAGATCCATCCAGAGCAAACTCTTTTGGTCGTGTTCGTAAAGGGGCTTCCGATGGTACTTCAGCAGTAAATGAAAATGGAACCCCTA GAAAACAAGATTCATCTGCTGCTGGGCAGAAGAAACTTCAAACCAATGTTCGCATACTTAGAGGCCATAGTGGTGCCGTTACTGCCTTACATTGTGTTAC CAGAAGAGAGGTCTGGGATCTAGTTGGTGACCGTGAAGATGCTGGTTTCTTTATCAGTGGAAGCACAGACTGCATGGTTAAAATCTGGGATCCTAGCATT CGTGGTTCCGAACTTCGTGCAACTCTGAAAGGGCATACCAGAACTGTTCGAGCTATAAGTTCTGATCGAGGAAAAGTGGTATCAGGATCTGATGATCAGT CTGTTATTGTATGGGATAAGCAAACATCCCAGCTTCTTGAAGAGCTGAAGGGCCATGATGCACAGGTTAGCTGTGTCCGTATGCTGTCTGGTGAACGTGT CCTGACTGCTGCACATGATGGAACTGTTAAGATGTGGGATGTCCGAACTGATACTTGTGTGGCAACGGTTGGCCGTTGCTCGAGTGCAGTCCTATGCATG GAGTATGATGATTCCACTGGAATCCTTGCTGCTGCTGGTAGAGATGCGGTTGCGAATATATGGGACATCCGTGCTGGTAGGCAGATGCACAAGCTTTTAG GGCACACAAAATGGATTCGGTCAATTAGAATGGTTGGAGACACACTGATTACTGGTAGTGATGATTGGACTGCAAGAGTGTGGTCCGTTTCACGAGGAAC ATGTGATGCTGTTCTAGCCTGCCATGCTGGTCCAATACTGTGTGTTGAGTATTCCATGTCAGACAGAGGAATAATAACAGGTTCAACTGATGGTCTTCTC CGATTTTGGGAAAATGAGGAAGAAGGCATAAGATGCGTGAAGAATGTTACTATTCATACCGCTCCTATATTATCCATCAATGCTGGGGAACACTGGCTGG GAATTGGAGCAGCTGACAATTCTATGTCCCTCTTTCACCAGCCTCAAGAGAGACTTGGTGGCTTCTCTAGCACGGGATCAAAAATGTCTGGGTGGCAACT TTACAGAACACCTCAAAGGACAGTTGCTATGGTTAGATGTGTGGCTTCTGACCTTGAAAGGAAAAGGATATGCAGCGGTGGTCGTAATGGAGTTCTTAGG TTATGGGAAGCGACCATCAATATTTGA
AA sequence Show only first row Show all	>Potri.015G049500.2 pacid=42775963 polypeptide=Potri.015G049500.2.p locus=Potri.015G049500 ID=Potri.015G049500.2.v4.1 annot-version=v4.1 MAGIFEYFVVCGLGPEMRTMDGNKGYHGMRVLYLPSLLDQYPPDNHCLYPPPPPQLPTCVLPAGVEFYPSGLDANDSSTFPKSYPIVLTEGDGSKIYVSC IAFRDPVSEDIAEAYRIPPNSFADKCICLVSRSPSFGVLRTALEELFALCFSPAGSSKPLWDVISYMVSNVPLPTPGKDRVLFAIENCLLSVEAPPKDGL PHVEISFQPLVQCLDVDNLLKLFTAVLLERRILLRSNKYSLLTLASEAICHLIYPLRWQHVYIPLLFFSGVDYIDAPTPYMMGLHSAVDTSYLAMDGVVV VDLEYNRICTSEEIPPIPEPELSTLRGEILKLLYPNVMGIDQMKAGLVSSSEQYFKGCNKPWGEDHDLQLRLIFLKFFASILGGYRNFIENTATHAFNTQ AFLRKRSRSTNQPPDAMITQFLDSHGFLDYLERVIDSDENNYNLLDKLQDAIGRGQNPISVLPSSWVEPEIITISDPDVGILGSGAKFTYDRFPANIRSE EHEEKRKQILAAASGAFDYIKHTPSSPSVQVGKDSLSPMERAAERERMVLDIKVKLQGLWLRLLKLRATDDPLSSFEYGTILALIESDAEGIGGSGFVEC IREHIHSGWHCQLTDEQFIAVKELLKTAISRATSRNDVSTIRDALEVSAEMYKRDANNVSDYVQRHLISLSIWEELRFWEGYFEYLMEHPSSKSANYSAL VTTQLILVALHMAGLGLLDTDAWHMIETIAEKNNIGYKQFIKLRGFLSHIQQVRISYWGISSVKAQSMRSPGLSSPRPKDSMDENEQPAEASVIGRSWVQ SMFSRDPSRANSFGRVRKGASDGTSAVNENGTPRKQDSSAAGQKKLQTNVRILRGHSGAVTALHCVTRREVWDLVGDREDAGFFISGSTDCMVKIWDPSI RGSELRATLKGHTRTVRAISSDRGKVVSGSDDQSVIVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTAAHDGTVKMWDVRTDTCVATVGRCSSAVLCM EYDDSTGILAAAGRDAVANIWDIRAGRQMHKLLGHTKWIRSIRMVGDTLITGSDDWTARVWSVSRGTCDAVLACHAGPILCVEYSMSDRGIITGSTDGLL RFWENEEEGIRCVKNVTIHTAPILSINAGEHWLGIGAADNSMSLFHQPQERLGGFSSTGSKMSGWQLYRTPQRTVAMVRCVASDLERKRICSGGRNGVLR LWEATINI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Potri.015G049500 [exp]	0	1	SCD1.3
AT4G02480			AAA-type ATPase family protein...		Potri.012G096300 [exp]	1.00	0.8649
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Potri.018G048700 [exp]	10.81	0.7547
AT4G02480			AAA-type ATPase family protein...		Potri.015G094100 [exp]	21.21	0.7046
AT5G15680			ARM repeat superfamily protein...		Potri.017G106100 [exp]	21.79	0.7210
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Potri.016G096500 [exp]	22.60	0.7129
AT1G25570			Di-glucose binding protein wit...		Potri.010G129300 [exp]	25.61	0.6670
AT1G04390			BTB/POZ domain-containing prot...		Potri.001G457550 [exp]	26.83	0.6980
AT3G17850			Protein kinase superfamily pro...		Potri.015G035600 [exp]	26.83	0.7060
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.004G104201 [exp]	29.29	0.7170
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Potri.005G046500 [exp]	37.52	0.6856

Compare expression of checked genes

Potri.015G049500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.