Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39380 94 / 1e-20 Plant calmodulin-binding protein-related (.1) AT5G61260 82 / 1e-16 Plant calmodulin-binding protein-related (.1) AT5G07820 81 / 4e-16 Plant calmodulin-binding protein-related (.1) AT5G15430 71 / 7e-13 Plant calmodulin-binding protein-related (.1) AT2G38800 43 / 0.0006 Plant calmodulin-binding protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G067100 [exp] 488 / 8e-171 AT5G07820 96 / 4e-21 Plant calmodulin-binding protein-related (.1) Potri.017G090200 [exp] 99 / 1e-21 AT5G39380 134 / 4e-33 Plant calmodulin-binding protein-related (.1) Potri.006G274600 [exp] 50 / 2e-06 AT5G24880 60 / 2e-09 unknown protein Potri.018G005500 [exp] 50 / 2e-06 AT5G10660 61 / 8e-10 calmodulin-binding protein-related (.1.2) Potri.016G041100 [exp] 45 / 0.0001 AT5G04020 114 / 4e-25 calmodulin binding (.1) Potri.001G024100 [exp] 42 / 0.0007 AT2G38800 134 / 2e-32 Plant calmodulin-binding protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030701 [exp] 92 / 1e-19 AT5G39380 132 / 6e-33 Plant calmodulin-binding protein-related (.1) Lus10021647 [exp] 85 / 3e-17 AT5G15430 95 / 5e-20 Plant calmodulin-binding protein-related (.1) Lus10034717 [exp] 79 / 1e-16 AT5G39380 86 / 1e-19 Plant calmodulin-binding protein-related (.1) Lus10034718 [exp] 70 / 1e-12 ND 47 / 4e-05 Lus10003472 [exp] 64 / 2e-10 AT5G15430 58 / 2e-08 Plant calmodulin-binding protein-related (.1) Lus10015733 [exp] 62 / 6e-10 AT5G15430 58 / 1e-08 Plant calmodulin-binding protein-related (.1) Lus10000141 [exp] 50 / 4e-06 AT5G15430 57 / 1e-08 Plant calmodulin-binding protein-related (.1) Lus10026227 [exp] 50 / 4e-06 AT5G10660 61 / 7e-10 calmodulin-binding protein-related (.1.2) Lus10042442 [exp] 50 / 4e-06 AT5G10660 61 / 8e-10 calmodulin-binding protein-related (.1.2) Lus10024175 [exp] 45 / 0.0001 AT3G54570 119 / 6e-28 Plant calmodulin-binding protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07839 [poplar] [flax] CaM_binding Plant calmodulin-binding domain
Representative CDS sequence Show only first row Show all	>Potri.015G049600.1 pacid=42775966 polypeptide=Potri.015G049600.1.p locus=Potri.015G049600 ID=Potri.015G049600.1.v4.1 annot-version=v4.1 ATGATTGAAAAAACTAATGATGTGATCAGAGAGAGGAGTTGTATGTCAACGATCCCAGATAATGGTTCTATCTTTCTGATTCATGAAAATGATTCTCTGA TCCCAGAGAATACCGAGCCTGAAGGTGGCCGTATAAGAAGGTACTCCACTGGGGATATAACTATCCCCTACACTAGAGTAAATATTCTTTCACGATATCT CGCATCGTCAACTGGTTCCTGCAATGATTATTGCAAATATGGAACAAAACATGATTCAGAAATGAAGACAAGGAATCCCATATTAAAGAGCATCAAAGAA AAGCAAGGCATGAATATGAAGAAGACTGTAATTTTAGCAGAAAGACAGGGAGCATTTCCATCTCCTGGCTCAAAAAGACACAACTCCAGCGTTCCTATTG TGACTGGGCGAAAAGTTTCATCATCAACCAAGAAAGAAATTGTACTTTCAAAACGGCTTTTATTACCTCTCAAGGTAAGATCAGGTGCTGGTGAGAAGAA GTTGGTGGCACCACCAGCTCTTTCTTCATCAGTCAAGAAAGTCCTGATGCGACCAATTGTTTCTGTGTTTTTCGAACATTATGTTAAAGGAGTTTCTCAA CTGAAGGGTCAAAATGAAGTTGTAAAGGCTGAATACAAGCAACCTGGCTGTCAGGATGTTTCAAAGAAGAGTTTGCCTATCAGTGAATTAGATACTGATG AGAACAAAGCTATGAAACTTTCTCAAATTGGAACTCTCACAGCTGGATTGTCTGCACCTCCTGCTAAGAAGATCATGAGGCACACTAAGAAAGGAATTCA TTCCACTCATCTGCCTCCATCCTCTGAGAAGAAGTGCGTTAGACATATTAAAGATGGAACAGCTCGCACTAGTCGAACACCCATATCTTCTTTGGCATCA TCCAAGTCTTCCCATAGCAGTGCCTGCAATGAATGCTATGTAACTGATCTTAAGAACACTGCTGCAAACAAACTACCATCTAAGACTAGGCCTAGGAAGG ATGCAGTAGTTTACACTACAGGTAAAGATTCCGCAGCCAGAAAGGTAAATTTTAGGTCAGGAATGGTGGTTGAACTTCAGCCTGAAAATAGAACTTCAAG GAGACTCATATTTAGGCGAAGATCCCTTGGCGAAGGCCAAATTGGTGAAACTGGTACCAGCAAAGACAACCTCAAGAGCAAAAAAGTTTGTGAAAATGAA GCTAATAGCGCAAAAATGGAATCGGAGAAAGTTGTTTTAGAACACCAAGATATGCAAGAAAAGAAAAATGTGCAGAGTTTGTTAAATAACATGATCGAGG AGACTGCAGTTAAGCTTGTCGAGAGCAGGAAGAGTAAGGTGAAAGCTCTGATTGGTGCTTTCGAAACTGTGATCTCTCTTCAGGATTCCAAAACCTCGTC AACAGTTGGTGCTTAA
AA sequence Show only first row Show all	>Potri.015G049600.1 pacid=42775966 polypeptide=Potri.015G049600.1.p locus=Potri.015G049600 ID=Potri.015G049600.1.v4.1 annot-version=v4.1 MIEKTNDVIRERSCMSTIPDNGSIFLIHENDSLIPENTEPEGGRIRRYSTGDITIPYTRVNILSRYLASSTGSCNDYCKYGTKHDSEMKTRNPILKSIKE KQGMNMKKTVILAERQGAFPSPGSKRHNSSVPIVTGRKVSSSTKKEIVLSKRLLLPLKVRSGAGEKKLVAPPALSSSVKKVLMRPIVSVFFEHYVKGVSQ LKGQNEVVKAEYKQPGCQDVSKKSLPISELDTDENKAMKLSQIGTLTAGLSAPPAKKIMRHTKKGIHSTHLPPSSEKKCVRHIKDGTARTSRTPISSLAS SKSSHSSACNECYVTDLKNTAANKLPSKTRPRKDAVVYTTGKDSAARKVNFRSGMVVELQPENRTSRRLIFRRRSLGEGQIGETGTSKDNLKSKKVCENE ANSAKMESEKVVLEHQDMQEKKNVQSLLNNMIEETAVKLVESRKSKVKALIGAFETVISLQDSKTSSTVGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39380			Plant calmodulin-binding prote...		Potri.015G049600 [exp]	0	1
					Potri.001G035450 [exp]	8.42	0.8666
AT5G05710			Pleckstrin homology (PH) domai...		Potri.010G190500 [exp]	19.69	0.8468
AT2G13690			PRLI-interacting factor, putat...		Potri.007G109300 [exp]	29.25	0.8402
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.005G206000 [exp]	42.70	0.8191
AT1G43760			DNAse I-like superfamily prote...		Potri.002G000350 [exp]	43.17	0.8333
AT1G73380			unknown protein		Potri.004G067200 [exp]	76.64	0.8032
AT2G42975			unknown protein		Potri.005G204200 [exp]	81.39	0.8005
AT5G02420			unknown protein		Potri.009G003400 [exp]	86.16	0.7895
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Potri.004G002800 [exp]	92.95	0.7900
AT1G62600			Flavin-binding monooxygenase f...		Potri.001G121100 [exp]	93.56	0.7741

Compare expression of checked genes

Potri.015G049600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.