Plant FIBer expression Database

Potri.015G049900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G73930 864 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G060200
[exp]
1117 / 0 AT1G73930 847 / 0.0 unknown protein
Potri.001G289250
[exp]
66 / 1e-13 AT1G73930 55 / 8e-11 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042970
[exp]
909 / 0 AT1G73930 955 / 0.0 unknown protein
Lus10032474
[exp]
907 / 0 AT1G73930 957 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0330 AVL9 PF08616 SPA Stabilization of polarity axis
Representative CDS sequence
>Potri.015G049900.4 pacid=42775110 polypeptide=Potri.015G049900.4.p locus=Potri.015G049900 ID=Potri.015G049900.4.v4.1 annot-version=v4.1
ATGAGTCGATCGCCTTCATTTGCTGTTAAACAGGAGCATAGTCTAAAGACTGATTTGGAATCTTTGCAGCAATGGGTTGTTGCCTTTTGCATTATTAGAT
TTGATCTTGAACAAGGCCAGCTTATTGAAGAGTGTTATCCACCTGGTTCTCTTTCAAATGAAGAGGAACTTGATGTTGCTTTTAGTTCATTTCCGGATTC
TGTTTCCCAGAACCAGAACCGTTCAAGCATTCATGATTGCATATTCTTTTTCCGCATCCAAAGGCGGAAGAGTTCTGAACAAAGAAATGTGAATTCGTCG
GAGACAGTAGAAATTGATGATAAAGAAGTATCTTCAAATTCCATGAAAGAGAAGGTGATTAATAGAAGAAAAATTAGAAATGATACCAAACAATTGAAAT
ACTTGTATGGCTATGTATTTAACAGGCAACGGCATGATGAGAGGCTAAGAAGAGGTGGAGAACAAAAATCTGTGGTGATATTATCACACAATCCTTACTC
CAGTGTGTTTAGGCCTTTGTTACAAATCATGGGTCCTTTATATTTTGATATAGGAAAGAAAGCTCTTGAGCATATTGCTGCTTATGTTTCAATGTGGCCT
GCTCCTGTACCTGGTAAACACATGGAGCTTCCTATTGGGAATGCCTTGCTTAAAGTTAGCTTGCCACCTGCTCATAGTCTGTCTTTTGAAATTGGGATGT
TTGAAGAATCTGCTTCTGCCATGGCACCTTTTCTTCCAAATAATCAGTCAATTCCACAGGGTCTGTTTCATGATTCAGATATATTTGGTACATTCCGGAG
CATTTTGTTGCAGCTCTGGTTGTTATGGGAACTGTTACTTATTGGTGAACCCATTCTAATCATAGGACCAACACCTCCCCAGTGTTGTGAGGCAGTTGCT
AGTCTAGTCAGTTTGGTTGCTCCATTGCCATGCAGTATTGATTTTAGGCCATACTTCACCATCCATGACCCTGATTTTAAGCATTTGAATTCACTTCGAG
AAGGAGACACTTTCCCTCCTATGATTTTGGGTGTGACGAATCTATTTTTCCTTAAAGCTCTTCGTAATATTCCCCACATTGTTTCAGTCGGCAGCCCTGC
TCTTAATTCAAATCAGGTTCCCTTTGCAAGTAGGTCTGCTGGCAGAATTCATGGAAGACCAGAAGGATTTGGTCTTCAGCAGCTTTCCTTGAAGAAGTTT
TCTCCTTCAAGTTTGTTGAGTGCTGTTAAATTAAGGAGAGATGGTCCTCTTTGCCTCATGACAGAACATAAGGAAGCTGTTTGGAGCACCTATGTCGCAA
CAACTAAGCCTGACACTTCTATCTTGAATAGGCTTATTGATGCTGGGATGTTACCAAGGGTTGAGGAGTCAATGTCAGTTGTTAACAATGAAATATTGCG
CCGTCATTTCTTAGAGCTCACCACCAACTTTTTGGCTCCTTTTGGCCCATATTTTAGGGCCACCACTCCTTCTGAAGGATCTCTTCCATTCATTGACCCT
CCCCCTCTTCCTCCATTTGACGCTGACGAATTTCTGGCAAACTTATCAGCAAGAGGTGTGGGGAAGTTTTTGTCGAAGCGGATGAAGTCTAATTGGCTGG
ATTTATACAAGAGGTTCCTGAACGGGCCAAACTTCATGCCATGGTTTCAAAGAAGGCTCACAGTTGCTGAACAAGAACAACATAGACTCTGGAGGCAGGC
AAGAATGAAAGCTGACATAAAGCTACTCATATCCAAAATGCCAGAATTGGAAATTGTTGATTATTTCAATGCTATTGAAAGACATCTCCATGGAGAAATT
CAGATGGAGAAGTTAGGAAGGGCTGCTGTTGACTTTACAGAAACTTGCCAGAAATTGAAGAAAGATCTGCAGGCAGTGTTCAATGTCCTTCCCAAAGACA
TGCAGCAGCTTTTGCTTATGAACCCTGAAAGAGCAGCTCTTTTACAATTAAGTTCGGAGCCAACAAAACTTCCTGGCCGGCCATCCTTACAAATTGGAGT
TGTATCTTCCACATCATCCAGATAA
AA sequence
>Potri.015G049900.4 pacid=42775110 polypeptide=Potri.015G049900.4.p locus=Potri.015G049900 ID=Potri.015G049900.4.v4.1 annot-version=v4.1
MSRSPSFAVKQEHSLKTDLESLQQWVVAFCIIRFDLEQGQLIEECYPPGSLSNEEELDVAFSSFPDSVSQNQNRSSIHDCIFFFRIQRRKSSEQRNVNSS
ETVEIDDKEVSSNSMKEKVINRRKIRNDTKQLKYLYGYVFNRQRHDERLRRGGEQKSVVILSHNPYSSVFRPLLQIMGPLYFDIGKKALEHIAAYVSMWP
APVPGKHMELPIGNALLKVSLPPAHSLSFEIGMFEESASAMAPFLPNNQSIPQGLFHDSDIFGTFRSILLQLWLLWELLLIGEPILIIGPTPPQCCEAVA
SLVSLVAPLPCSIDFRPYFTIHDPDFKHLNSLREGDTFPPMILGVTNLFFLKALRNIPHIVSVGSPALNSNQVPFASRSAGRIHGRPEGFGLQQLSLKKF
SPSSLLSAVKLRRDGPLCLMTEHKEAVWSTYVATTKPDTSILNRLIDAGMLPRVEESMSVVNNEILRRHFLELTTNFLAPFGPYFRATTPSEGSLPFIDP
PPLPPFDADEFLANLSARGVGKFLSKRMKSNWLDLYKRFLNGPNFMPWFQRRLTVAEQEQHRLWRQARMKADIKLLISKMPELEIVDYFNAIERHLHGEI
QMEKLGRAAVDFTETCQKLKKDLQAVFNVLPKDMQQLLLMNPERAALLQLSSEPTKLPGRPSLQIGVVSSTSSR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G73930 unknown protein Potri.015G049900
[exp]
0 1
AT3G17810 PYD1 pyrimidine 1 (.1) Potri.012G043300
[exp]
6.00 0.7061
AT1G09230 RNA-binding (RRM/RBD/RNP motif... Potri.019G031700
[exp]
9.64 0.7433
AT5G08110 nucleic acid binding;ATP-depen... Potri.012G063000
[exp]
10.09 0.7370
AT1G31840 Tetratricopeptide repeat (TPR)... Potri.015G036400
[exp]
18.76 0.7318
AT3G19180 ATCDP1, ARC6H, ... A. THALIANA CHLOROPLAST DIVISI... Potri.012G036100
[exp]
32.49 0.6859
Potri.004G140150
[exp]
39.16 0.6006
AT5G10690 pentatricopeptide (PPR) repeat... Potri.006G274133
[exp]
42.07 0.6952
AT5G18610 Protein kinase superfamily pro... Potri.010G021500
[exp]
47.32 0.6553
AT1G77850 ARF ARF17 auxin response factor 17 (.1) Potri.005G171300
[exp]
51.26 0.6975
AT3G23780 NRPE2, DMS2, DR... DEFECTIVE IN MERISTEM SILENCIN... Potri.018G019100
[exp]
52.72 0.6669

Potri.015G049900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.