Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18470 748 / 0 Transmembrane Fragile-X-F-associated protein (.1.2) AT1G73950 742 / 0 Transmembrane Fragile-X-F-associated protein (.1) AT1G68820 679 / 0 Transmembrane Fragile-X-F-associated protein (.1) AT4G39050 61 / 1e-09 Kinesin motor family protein (.1) AT2G21380 59 / 7e-09 Kinesin motor family protein (.1) AT3G12920 52 / 5e-07 BRG3 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) AT2G35330 48 / 1e-05 RING/U-box superfamily protein (.1.2) AT4G03000 45 / 0.0001 RING/U-box superfamily protein (.1.2) AT1G10650 44 / 0.0002 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT3G06140 44 / 0.0003 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G060100 [exp] 867 / 0 AT1G18470 673 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Potri.008G116400 [exp] 645 / 0 AT1G68820 667 / 0.0 Transmembrane Fragile-X-F-associated protein (.1) Potri.010G129932 [exp] 114 / 3e-30 AT1G68820 120 / 5e-33 Transmembrane Fragile-X-F-associated protein (.1) Potri.004G161100 [exp] 60 / 2e-09 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.009G122100 [exp] 59 / 6e-09 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1) Potri.001G144200 [exp] 50 / 2e-06 AT2G35330 780 / 0.0 RING/U-box superfamily protein (.1.2) Potri.003G090000 [exp] 50 / 2e-06 AT2G35330 726 / 0.0 RING/U-box superfamily protein (.1.2) Potri.014G138000 [exp] 49 / 4e-06 AT1G63900 548 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Potri.010G042200 [exp] 47 / 2e-05 AT1G10650 393 / 2e-137 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032471 [exp] 736 / 0 AT1G18470 701 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Lus10042969 [exp] 732 / 0 AT1G18470 698 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Lus10021710 [exp] 593 / 0 AT1G18470 687 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Lus10035057 [exp] 572 / 0 AT1G68820 639 / 0.0 Transmembrane Fragile-X-F-associated protein (.1) Lus10017969 [exp] 59 / 6e-09 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10028790 [exp] 59 / 7e-09 AT4G39050 1242 / 0.0 Kinesin motor family protein (.1) Lus10027994 [exp] 57 / 1e-08 AT1G63900 532 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10008163 [exp] 51 / 1e-06 AT1G63900 533 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10004557 [exp] 49 / 4e-06 AT2G35330 473 / 2e-162 RING/U-box superfamily protein (.1.2) Lus10000899 [exp] 48 / 1e-05 AT2G35330 463 / 2e-158 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10269 [poplar] [flax] Tmemb_185A Transmembrane Fragile-X-F protein CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.015G050300.1 pacid=42776418 polypeptide=Potri.015G050300.1.p locus=Potri.015G050300 ID=Potri.015G050300.1.v4.1 annot-version=v4.1 ATGAACTGGAGAAGAGTATTGAAATCAGTACAGGCACTAGCGGCACACTGTCTTCTCTTCTCTTTCACTCTCTTTCTCGTCCTCAAGCTTGATCACGTCG TCTCCTACTCTTGGTGGTTAATTTTCTTCCCACTCTGGACATTCCATGTAGTTGTTGCTCGAGGAAGATTTTCATTACCTGCTCCATCAGTTCCACGTAA TCGCCATTGGGCGCCATGCCATGCAGTTGTGGCAACACCGTTGCTTATTGCATTTGAACTGCTTCTTTGTATATATCTCGAAAGTGTTTATGTTTATCAT ATTGCTGCTGTAAACTTGAAGATTGTCTTTATTCCATTGTTGGCATTTGAAGTAATTATTCTAATTGACAATTTCAGAATGTGTAAGGCTCTTATGCCTG GAGAAGAAGAAAGCATTAGTGATGAAGCGATATGGGAAACATTGCCTCACTTCTGGGTTGCAATTTCTATGGTTTTCTTTGTGGCTGCTACAGTCTTTAC CCTTCTAAAGCTGGGCGGTGATGTGGGTGCACTTGGCTGGTGGGACCTGTTCATAAACTTTAGCATTGCTGAGTGCTTTGCCTTTCTTGTCTGTACTAAA TGGTCTAATCCAGTGATCCATAGAAATTCTCAGACAAGAGAAGCTTCATCTTCAATGACGATTAGATATCTTGATTGGAATGGTGGCTTAATGGTTTCTC CAGAGGAGAATCAACACCAGGACAGAATGTGTGGTCTACAAGATATTGGTGGCCATCTCATGAAAATTCCCTTGATTGGTTTCCAAGTTCTCCTTTGTAT GCATTTAGAGGGAACACCTGCTGGTGCTAGAAATATACCGCTTCTGGTTCTTTTCTCTCCGCTTTTCCTGCTTCAAGGTGCTGGTGTATTATTTGCTGCT TCTAAGTTGGCAGAGAAGCTTGTTCTTTTATTACGGAGTGAAGCTGGCACTGGAAGATATTTTACATTTTCCTCAAGAGCTCATGACTGCTTGGGGTTCT TGCACCATGGTTCCAGGCTACTGGGATGGTGGTCAATTGATGAGGGAAGTCAAGAGGAACAGGCCCGATTGTACCACATGGGTGATGCCAGTTATAATAC TTTCTGTGGTTATCCTCCTGAGATAGTGAAGAAAATGCCTAAAAAGGATCTTGCTGAGGAGGTATGGAGGCTTCAAGCAGCTCTTGGTGAGCAGACAGAA ATCACCAAATACAGCCAGCAGGAGTTTGAAAGACTTCAAAATGAAAAAGTTTTATGCAGGGTGTGCTTTGAGGGAGAGATCAGTGTGGTTCTGCTCCCCT GTAGACATCGTATCCTTTGCAGCACCTGCTGTGAGAGGTGTAAAAAATGTCCAATTTGTCGTGTATCTGTTGAGGAGCGCTTATCTGTATATGATGTTTA G
AA sequence Show only first row Show all	>Potri.015G050300.1 pacid=42776418 polypeptide=Potri.015G050300.1.p locus=Potri.015G050300 ID=Potri.015G050300.1.v4.1 annot-version=v4.1 MNWRRVLKSVQALAAHCLLFSFTLFLVLKLDHVVSYSWWLIFFPLWTFHVVVARGRFSLPAPSVPRNRHWAPCHAVVATPLLIAFELLLCIYLESVYVYH IAAVNLKIVFIPLLAFEVIILIDNFRMCKALMPGEEESISDEAIWETLPHFWVAISMVFFVAATVFTLLKLGGDVGALGWWDLFINFSIAECFAFLVCTK WSNPVIHRNSQTREASSSMTIRYLDWNGGLMVSPEENQHQDRMCGLQDIGGHLMKIPLIGFQVLLCMHLEGTPAGARNIPLLVLFSPLFLLQGAGVLFAA SKLAEKLVLLLRSEAGTGRYFTFSSRAHDCLGFLHHGSRLLGWWSIDEGSQEEQARLYHMGDASYNTFCGYPPEIVKKMPKKDLAEEVWRLQAALGEQTE ITKYSQQEFERLQNEKVLCRVCFEGEISVVLLPCRHRILCSTCCERCKKCPICRVSVEERLSVYDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18470			Transmembrane Fragile-X-F-asso...		Potri.015G050300 [exp]	0	1
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Potri.008G112200 [exp]	1.00	0.7992
					Potri.010G060800 [exp]	1.41	0.7666
AT4G33940			RING/U-box superfamily protein...		Potri.004G143900 [exp]	2.00	0.7140
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.019G127500 [exp]	4.00	0.6921	Pt-CIPK2.1
AT5G64730			Transducin/WD40 repeat-like su...		Potri.001G306500 [exp]	6.00	0.7075
AT1G20460			unknown protein		Potri.005G248300 [exp]	7.34	0.6905
AT2G31090			unknown protein		Potri.019G090500 [exp]	7.34	0.7287
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Potri.006G222800 [exp]	9.16	0.6752
AT1G69340			appr-1-p processing enzyme fam...		Potri.010G161500 [exp]	9.48	0.6733
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Potri.002G170100 [exp]	9.48	0.6213

Compare expression of checked genes

Potri.015G050300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.