Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68800 86 / 2e-18 TCP TCP12, BRC2, TCP18 BRANCHED 2, TCP domain protein 12 (.1) AT3G18550 84 / 2e-17 TCP AtBRC1, ATTCP18, TCP18, BRC1, TCP12 BRANCHED 1, TCP family transcription factor (.1.2) AT1G67260 78 / 9e-16 TCP TCP1 TCP family transcription factor (.1.2) AT1G53230 69 / 2e-12 TCP TCP3 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 (.1) AT3G15030 69 / 2e-12 TCP TCP4, MEE35 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) AT2G31070 68 / 2e-12 TCP TCP10 TCP domain protein 10 (.1) AT4G18390 65 / 3e-11 TCP TCP2 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) AT1G30210 61 / 6e-10 TCP ATTCP24, TCP24 TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 (.1.2) AT5G60970 55 / 3e-08 TCP TCP5 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1) AT3G02150 55 / 3e-08 TCP TFPD, PTF1, TCP13 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G059900 [exp] 415 / 5e-144 AT1G68800 84 / 6e-18 BRANCHED 2, TCP domain protein 12 (.1) Potri.008G115800 [exp] 102 / 1e-23 AT1G68800 119 / 8e-30 BRANCHED 2, TCP domain protein 12 (.1) Potri.010G130200 [exp] 90 / 2e-19 AT1G68800 121 / 2e-30 BRANCHED 2, TCP domain protein 12 (.1) Potri.017G112000 [exp] 81 / 1e-16 AT1G67260 111 / 1e-27 TCP family transcription factor (.1.2) Potri.019G091300 [exp] 68 / 2e-12 AT3G15030 227 / 5e-71 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.001G375800 [exp] 68 / 3e-12 AT1G53230 279 / 1e-90 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 (.1) Potri.013G119400 [exp] 67 / 5e-12 AT3G15030 243 / 4e-77 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.011G096600 [exp] 67 / 6e-12 AT3G15030 262 / 7e-84 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.004G065800 [exp] 63 / 2e-10 AT4G18390 151 / 2e-41 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042962 [exp] 86 / 6e-18 AT1G68800 94 / 5e-21 BRANCHED 2, TCP domain protein 12 (.1) Lus10032465 [exp] 83 / 4e-17 AT1G68800 92 / 2e-20 BRANCHED 2, TCP domain protein 12 (.1) Lus10021713 [exp] 78 / 8e-16 AT3G18550 107 / 2e-26 BRANCHED 1, TCP family transcription factor (.1.2) Lus10035055 [exp] 78 / 9e-16 AT1G68800 102 / 7e-25 BRANCHED 2, TCP domain protein 12 (.1) Lus10000463 [exp] 69 / 2e-12 AT3G15030 224 / 1e-69 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Lus10003078 [exp] 68 / 2e-12 AT1G67260 105 / 2e-25 TCP family transcription factor (.1.2) Lus10034072 [exp] 68 / 3e-12 AT1G67260 100 / 4e-23 TCP family transcription factor (.1.2) Lus10023297 [exp] 61 / 7e-10 AT4G18390 207 / 8e-63 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Lus10038512 [exp] 61 / 1e-09 AT4G18390 204 / 1e-60 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Lus10017856 [exp] 55 / 3e-08 AT5G60970 175 / 6e-52 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03634 [poplar] [flax] TCP TCP family transcription factor
Representative CDS sequence Show only first row Show all	>Potri.015G050500.1 pacid=42775436 polypeptide=Potri.015G050500.1.p locus=Potri.015G050500 ID=Potri.015G050500.1.v4.1 annot-version=v4.1 ATGTTTCCATTAAGCAACAATGGCAATGACCCCATGTCCTATAATGACCAACAAGCTTATAACATGCCCTTTTTCAGTGATATCATTTCCAATTCCAAAC AATATGTGCCTCCTCCTTTATCTTTCTGCCACTTGCCCTCTCCTTTTTTTGCCTATGATCAGCTAGAATTAGAAGACCATTCTATTTTTCTCCAGCAAAA CTATGACCTTTTACTTCACCAGCAACCCTTGAGAACTGCAGCTACCAGTACTACTCCCTCTCAGAGTACTGTTGTTAATAACATGGTGGATTACAACAAA AATGACGTTATTGAGATAACGGAAATCTGCAACAAGCAATCCAACAGCAGCACTGATCAGATCCCAAGAAAGAGATCTTCTAAGAAAGATCGACACAGCA AGATTAACACGGCTCAAGGACCAAGAGATCGGAGGATGAGATTGTCGCTAAAGGTTGCCAGAGAGTTCTTTGATCTGCAAGACAAGCTACGCTTTGATAA AGCAAGCAAGACTGTAGAATGGTTACTCACACAGGCAAGAACTGAAATCAAAAAACTATCTAGTGGCTTCCCCGTTATGAATTATAGCTGCAGTGTTGGC ACCAAGAGTGCATCTTCTACTTCTGAGTGTGAAGTGCTGTCCGAAATCCATATTGACTCTACCCTTAAAGTGAGCAGTGTTTCTAAGGGTAAATCCTCAC TATGTGTCAAGAAAGAGAGGAGGACTAGTAGAGCTTCATCATCACGTAAAGCTCTATTAAACCCTTTTGCAAAGGAATCAAGGGAGAAGGCAAGGGAGAG GGCAAGGGAGAGAACGAAAGAAAAGTTGCGGAGTCGAAGTCGAAGCCTCGATGAATCGAAGCTTTGTGAATTAGAAGCAGTGAACGATGAATTCAATCAA TTCGCAGGTTGTTGGAGTCCATTCGAAACAGGTGATCAAGAATCAGGTACTCACAATATCAATCCTTCCTTAGAAGTCCAACTGGCTGAAGCTGAAGTGC CGTTCTATCAAGAGCAAGAGCAAGAGCAATTAGATACTCGTGAGGGGATGATTGATGAAACCTTGGTGAATATGGGCAAGTGGAGTCCCTCTCTTCCCAA TCATCCACACAAAAATGGAATTCCTCAAGAGAATCAATTCACAGACTTTCAATATCCTTTGTACAAAACATGGGATCATGAGGCCTACAACATTGACGGT ATGTGCTAG
AA sequence Show only first row Show all	>Potri.015G050500.1 pacid=42775436 polypeptide=Potri.015G050500.1.p locus=Potri.015G050500 ID=Potri.015G050500.1.v4.1 annot-version=v4.1 MFPLSNNGNDPMSYNDQQAYNMPFFSDIISNSKQYVPPPLSFCHLPSPFFAYDQLELEDHSIFLQQNYDLLLHQQPLRTAATSTTPSQSTVVNNMVDYNK NDVIEITEICNKQSNSSTDQIPRKRSSKKDRHSKINTAQGPRDRRMRLSLKVAREFFDLQDKLRFDKASKTVEWLLTQARTEIKKLSSGFPVMNYSCSVG TKSASSTSECEVLSEIHIDSTLKVSSVSKGKSSLCVKKERRTSRASSSRKALLNPFAKESREKARERARERTKEKLRSRSRSLDESKLCELEAVNDEFNQ FAGCWSPFETGDQESGTHNINPSLEVQLAEAEVPFYQEQEQEQLDTREGMIDETLVNMGKWSPSLPNHPHKNGIPQENQFTDFQYPLYKTWDHEAYNIDG MC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Potri.015G050500 [exp]	0	1
AT4G36600			Late embryogenesis abundant (L...		Potri.007G024000 [exp]	2.82	0.8152
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025425 [exp]	7.41	0.7843
AT1G65810			P-loop containing nucleoside t...		Potri.004G077100 [exp]	7.48	0.7561
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G026200 [exp]	7.48	0.7890
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Potri.002G032400 [exp]	8.30	0.7967
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Potri.012G059900 [exp]	9.64	0.6976
AT5G57810		TET15	tetraspanin15 (.1)		Potri.006G178000 [exp]	10.24	0.7107
					Potri.017G094750 [exp]	14.49	0.6560
AT5G23350			GRAM domain-containing protein...		Potri.004G068200 [exp]	24.00	0.7069
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.004G026350 [exp]	25.80	0.6839

Compare expression of checked genes

Potri.015G050500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.