Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73960 1553 / 0 TAF2 TBP-associated factor 2 (.1.2) AT4G33090 49 / 4e-05 ATAPM1, APM1 aminopeptidase M1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036010 [exp] 1827 / 0 AT1G73960 1466 / 0.0 TBP-associated factor 2 (.1.2) Lus10016716 [exp] 1821 / 0 AT1G73960 1469 / 0.0 TBP-associated factor 2 (.1.2) Lus10026448 [exp] 52 / 3e-06 AT4G33090 1389 / 0.0 aminopeptidase M1 (.1) Lus10025001 [exp] 52 / 3e-06 AT4G33090 1385 / 0.0 aminopeptidase M1 (.1) Lus10025002 [exp] 45 / 0.0007 AT4G33090 1196 / 0.0 aminopeptidase M1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF01433 [poplar] [flax] Peptidase_M1 Peptidase family M1 domain
Representative CDS sequence Show only first row Show all	>Potri.015G050800.1 pacid=42776001 polypeptide=Potri.015G050800.1.p locus=Potri.015G050800 ID=Potri.015G050800.1.v4.1 annot-version=v4.1 ATGGCTAAGCCTCGTAAGCCGAAAAACGAAGACGCCAAGCCTGAGAACTCCGGTGCCGTAGTTCGTCACCAGAAACTCTGCCTCTCTATCGACATCGACA AGCACCAAATCTACGGTTACACTGAGTTGGAAATTGCGGTGCCGGATATAGGAATTGTAGGGTTACATGCGGAGAATTTAGGAATAGAGAGTGTATTTGT TGATGGTGAAGCTACTGAGTATGAATATTATCCACATCAGCAACAAAATGTGGATGGTGAAAAGAGATGGAGCTCAGTTACGAGCCCTAGCTCGGCTGCT GACGCTGCTGGCGCTGTGTATTTATCGGCTCTGGAGAGAGAACGTGTTCCGAATTTGCTAATTAATTGTTGTAAAGCTTTTAGGGTTCCAAATGAAGTGC AAGAGATTGTGAATTTGGAGAATGGAGTGCCATTTTCTGGTGAACCTAAGCAGAATGTAAAATTGGTGCGCATTAATTATTGGGTAGAGAAAGCAGAGAC GGGCATTCATTTTGACAATGAAGTGGTACATACTGATAACCAAATAAGGCGTGCACGTTGCTGGTTCCCTTGTATGGATGAAGGATTTCAGCGTTGCTGT TATGATCTGGAGTTTACAGTTGCCCATAATCTTGTTGCTGTTAGTACTGGAAGCTTATTATATCAGGTTCTGAGCAAGGATGATCCTCCTCACAAAACAT TTGTCTACAGATTAGATGTTCCTGTGACTGCTCAATGGATATCTTTGGTGGTTGCACCATTTGAAATACTTCCTGATCCGCATGTTGCTCTTATATCACA CATGTGCTTGCCATCTAATTTGTCAAAGCTCCGGAATACCATCAAAATTTTTCATAATGCGTTCAACTATTATGAAGAATACCTTGATGCAAAATTTCCA TTTGGGTCATACACACAAGTTTTTTTAGCTCCTGAGATGATTGTATCCTCAACAAATCTGGGAGCTTCAATGGGTGTCTTTAGCTCTCAAGTTTTATATG ATGAGACGGTTATTGATCAGGCCATAGACACTAGCATTAAACTTGCTTTTGCACTCGCAAAACAATGGTTTGGGGTATATGTCACTCCCGAGGAACCTAA TGATGAATGGCTTCTGGATGGGCTTGCTGGCTTTTTGACAGAGTTATTTATAAAGAAGTTTTTAGGAAATAATGAAGCTCGCTATCGCAGATACAAGGCT AATTGTGCTGTTTGCAAGGTAGATGATAGTGGTGCGACAGCTTTGAGCTTCTCTGCTTCTTGCAAGGAATTGCATGGAACCCATAAAATTGGTCTTTATG GGAAAATAAGATCTTGGAAGTCTGTGGCAATATTGCAAATGCTGGAAAAGCAAATGGGTCCAGAGTTTTTCCGCAAGATTTTGCAAAAGGTTATTTCCCG GGCTCGAGATACAATCCCTGTCAGATCACTCAGTACAAAGGAGTTCCGGCACTTCGCTACTAAGGTTGGAAATCTTGAGCGCCCATTTGTGAAAGAATTT TTCCTGCGATGGGTCTGCTCTTGTGGATGTCCAGTGCTAAGGATGGGGTTCTCTTATAACAAAAGGAAAAATATGGTTGAATTGGCGGTGCTTCGAGAGT TTACAGCTGCACCTGATGCAAATGCATCTTTCCTTAACCTTGATTCTGAAAACCGGGAGGGTGATATTGGATGGCCAGGGATGATGAGTATCAGAGTTTA TGAACTTGATGGCATGTATGACCATCCGGTTCTACCTTTGGCTGGAGAAATGTGGCAGCTATTGGAAATACAGTGCCATTCAAAGCTTGCAGCCAGACGT TTCCAAAAACCTAAAAAGAGTTCAAAACCTGATGGCTTTGATGAAAATGGTGATGTACCTGCTTCAGATATGCGCTCCAGTTTGGAATCCCCGTTGTCAT GGATTAGGGCAGACCCAGAAATGGAATATCTTGCTGAAATTCATTTTAATCAGCCTATACAGATGTGGATCAATCAATTAGAGAGGGATGAAGATGTTGT TGCACAGGCGCAAGCAATTGCAGCATTAAAAACTTTACCACAACTTTCCTTTTCTGTTACAAATGCTATGAATAATTTCCTCAACGACACCAAGGCCTTC TGGAGAGTTCGAATTGAGACTGCATTTGCATTGGCTAATACTGCTTCTGAGGAAAATGATTGGGCTGGCTTACTCCATTTGGTGAAATTTTACAAAAGTC GAAGGTTTGATGCAGCTATTGGACTCCCCAAGCCAAATGACTTTCATGATTTTCCCGAGTACTTTGTTCTTGAGGCAATTCCTCATGCTGTTGCTAAGGT CAGGGCTGCAGATAAGAAAAGCCCAAGAGAAGCTGTTGAATTTATTTTGCAACTTCTGAAGTATAACGATAACACTGGAAATCCTTACTCTGATGTGTTC TGGTTAGCTGCACTGGTCCAGTCAGTTGGTGAACTTGAATTTGGGCAACAGACTGTTCTCTTTCTGTCCTCCCTTCTCAAGCGAATTGACTGTCTTTTAC AATTTGACAGGCTGATGCTGAGTTATAATGGGATCTTGACAATCAGCTGTATTCGAACATTGACACAAATTGCATTAAAACTCTCAGGATCCATTCATCA TGATCATGTCTTTGAACTTATTAAACCTTTTCGGGATTTCAAGACAATATGGCAAATTCGAATTGAAGCCAGTAGAGCACTCCTTGATCTGGAATTCCAC TGCAAAGGCATGGATGCAGCATTGTCATTGTTTATCACATATTTGGAGGAAGAACCGTCATTAAGAGGGCAGGCAAAACTTGGTGCACATGCCATGCGGT TATGTCAGATACAAGATGAATCTGATTCTGAAGATGCTATCAAGTGTACAACTCTCTTGGCTTTGATTCGTCTACTTGAAGGTCATATCGGATTCAACAA TACCATTCTTCGGCATCACTTGTTCTGCATTTTACAAATCCTTGCAGGAAGGGCCGCAACACTTTATGGAATTCCCAGGGATAGAACATTATGTATTGGC GACTCAGAAACTTGCAGTGATCCAAGGAATATTTTTGCAGGTCTTGTGACAGAAACAAAGCCCCTGGAACCTCCTATGGAGATTCCAAAACTTGCACAAG ATAATTTTGCCTTTCCAGAGGCTATAAAGGAAGCGGATATAATTTCCAACAAAGATCAACATAAGATGGATATGGCCATTCCAGAAGGTCCCAATGATCC AGATACGATTTCCAACAATCATAGACAGAAGATGGATCTGGCCATTCAAGAAGCTTCAGAAGAAGTAGCTGTGCCTGAAGCTTCAAAGGAAACAGACATC CCAGTAGCTTCAAAGGAAGAAGATAACATCTCCAACAGCCATGAGCGCAGACGGCCAGTTGTTAAGATCAGAGTCAAACATTCTGCTGCTTCCAGTAGAG CTGAGGAGACTGATATTCAAAATGTTGAGAGATCCCAAGGTGGGCACCATGAAACTGATCGTGGGGCCAGCAGCTCTGTTTCTGTGGATGCACCCCAGAG GATTTCAACTGAAGCTGTGAGTATTAGCTACCAAAATCTCGAGGAAGTCAACTCGTGTCTTGACCATGGTTCTCGGATGAGTGCTAGCATTGGCAGTGCA AAATTAGCAAGTGATGGTGACAATTTTGGAAAGGAACTCCAGTGCACTGCTGAATCAAGTAAAGTTTCTATGCACCCTCAGCCTGATGATCCATCATCAC CTAGAGTCATGCAAGATAACCTTGTAGACACTGATGCACAAAGGTTTGCTAGTCTACAAACCCTCTCAGTTGAAAGAGTTAATCCTGATGGTGGTTCATT GGGTATCATGGCATCTTCTTCTCGAGGGAAAGAAAAGGAGAAGAAGAAGGATAAGGAAAAGAAGCGGAAGCGGGAAGATCACAAGGGGCACCGTGATGAT CCTGAATATTTGGAGAGGAAACTGTTGAAGAAAGAGAAGAAAAGGAAAGAAAAGGAGATGACAAAGTTGCTGAGTGGTGGGGCAAAGGCTACATCAGTGG AGCTGCCAGGTAAGAATGAGAAGCCTACTATTAAGTTGGCAACAGTGCCATTGAAACCAAATCAACCCAGTGAATCCAAAGCAGTGGCCACGAACATTGA AACGAAGCCTGAGCCATCAGAAGGTACTTCTGTTCCCAAATTTCGAATTAAAATTAAGAATAGGACACTTAACAGTTAG
AA sequence Show only first row Show all	>Potri.015G050800.1 pacid=42776001 polypeptide=Potri.015G050800.1.p locus=Potri.015G050800 ID=Potri.015G050800.1.v4.1 annot-version=v4.1 MAKPRKPKNEDAKPENSGAVVRHQKLCLSIDIDKHQIYGYTELEIAVPDIGIVGLHAENLGIESVFVDGEATEYEYYPHQQQNVDGEKRWSSVTSPSSAA DAAGAVYLSALERERVPNLLINCCKAFRVPNEVQEIVNLENGVPFSGEPKQNVKLVRINYWVEKAETGIHFDNEVVHTDNQIRRARCWFPCMDEGFQRCC YDLEFTVAHNLVAVSTGSLLYQVLSKDDPPHKTFVYRLDVPVTAQWISLVVAPFEILPDPHVALISHMCLPSNLSKLRNTIKIFHNAFNYYEEYLDAKFP FGSYTQVFLAPEMIVSSTNLGASMGVFSSQVLYDETVIDQAIDTSIKLAFALAKQWFGVYVTPEEPNDEWLLDGLAGFLTELFIKKFLGNNEARYRRYKA NCAVCKVDDSGATALSFSASCKELHGTHKIGLYGKIRSWKSVAILQMLEKQMGPEFFRKILQKVISRARDTIPVRSLSTKEFRHFATKVGNLERPFVKEF FLRWVCSCGCPVLRMGFSYNKRKNMVELAVLREFTAAPDANASFLNLDSENREGDIGWPGMMSIRVYELDGMYDHPVLPLAGEMWQLLEIQCHSKLAARR FQKPKKSSKPDGFDENGDVPASDMRSSLESPLSWIRADPEMEYLAEIHFNQPIQMWINQLERDEDVVAQAQAIAALKTLPQLSFSVTNAMNNFLNDTKAF WRVRIETAFALANTASEENDWAGLLHLVKFYKSRRFDAAIGLPKPNDFHDFPEYFVLEAIPHAVAKVRAADKKSPREAVEFILQLLKYNDNTGNPYSDVF WLAALVQSVGELEFGQQTVLFLSSLLKRIDCLLQFDRLMLSYNGILTISCIRTLTQIALKLSGSIHHDHVFELIKPFRDFKTIWQIRIEASRALLDLEFH CKGMDAALSLFITYLEEEPSLRGQAKLGAHAMRLCQIQDESDSEDAIKCTTLLALIRLLEGHIGFNNTILRHHLFCILQILAGRAATLYGIPRDRTLCIG DSETCSDPRNIFAGLVTETKPLEPPMEIPKLAQDNFAFPEAIKEADIISNKDQHKMDMAIPEGPNDPDTISNNHRQKMDLAIQEASEEVAVPEASKETDI PVASKEEDNISNSHERRRPVVKIRVKHSAASSRAEETDIQNVERSQGGHHETDRGASSSVSVDAPQRISTEAVSISYQNLEEVNSCLDHGSRMSASIGSA KLASDGDNFGKELQCTAESSKVSMHPQPDDPSSPRVMQDNLVDTDAQRFASLQTLSVERVNPDGGSLGIMASSSRGKEKEKKKDKEKKRKREDHKGHRDD PEYLERKLLKKEKKRKEKEMTKLLSGGAKATSVELPGKNEKPTIKLATVPLKPNQPSESKAVATNIETKPEPSEGTSVPKFRIKIKNRTLNS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Potri.015G050800 [exp]	0	1
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Potri.002G181400 [exp]	1.41	0.8816	SIN1.1,DCL902
AT2G29200		APUM1	pumilio 1 (.1)		Potri.010G201100 [exp]	4.00	0.8644
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Potri.019G054600 [exp]	5.29	0.8549
AT1G01790		ATKEA1, KEA1	K+ efflux antiporter 1, K+ EFF...		Potri.014G080800 [exp]	6.08	0.8055
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.003G220800 [exp]	6.24	0.8610
AT5G67570		EMB246, DG1, EM...	EMBRYO DEFECTIVE 246, embryo d...		Potri.007G004900 [exp]	7.07	0.8417
AT1G77800			PHD finger family protein (.1....		Potri.005G171800 [exp]	7.34	0.8521
AT4G04920		AtSFR6, SFR6	sensitive to freezing 6 (.1.2)		Potri.011G049700 [exp]	8.12	0.8387
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.011G094100 [exp]	10.95	0.8527
AT1G72390			unknown protein		Potri.003G069200 [exp]	10.95	0.8490

Compare expression of checked genes

Potri.015G050800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.