Plant FIBer expression Database

Potri.015G051000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G03280 499 / 1e-174 Transcription factor TFIIE, alpha subunit (.1)
AT4G20340 433 / 8e-149 Transcription factor TFIIE, alpha subunit (.1)
AT4G20810 386 / 2e-131 transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G102000
[exp]
640 / 0 AT1G03280 484 / 7e-169 Transcription factor TFIIE, alpha subunit (.1)
Potri.008G139375
[exp]
40 / 9e-05 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019269
[exp]
584 / 0 AT1G03280 505 / 3e-177 Transcription factor TFIIE, alpha subunit (.1)
Lus10011554
[exp]
582 / 0 AT1G03280 505 / 2e-177 Transcription factor TFIIE, alpha subunit (.1)
Lus10002585
[exp]
42 / 0.0002 AT4G20340 42 / 3e-05 Transcription factor TFIIE, alpha subunit (.1)
PFAM info
Representative CDS sequence
>Potri.015G051000.1 pacid=42775154 polypeptide=Potri.015G051000.1.p locus=Potri.015G051000 ID=Potri.015G051000.1.v4.1 annot-version=v4.1
ATGAGTATCGAGCCTTTCAATAGGCTTGTGAAGCTTGCGGCTCGAGCATTTTATGATGATATAACAACAAAAGGAGACAATCAACCCAAAACGGGACGGA
GTGATAATAGGGGCATCGCTGTAGTAGTGCTTGACGCTCTCACTAGACGACAATGGGTAAGGGAAGAAGATTTGGCCAAGGAGTTGAAATTACACTCGAA
GCAACTTCGTCGGACTCTGCGGTTTTTCGAGGAAGAAAAACTCGTGACCCGGGATCATAGGAAAGAGACGGCTAAGGCTGCGAAGATGCATAATGCTGCA
GTAGCTAACACTACTGATGGGCATAGAACCAAGGAGGGAGATGACAAGATCAAGATGCACACTCACTCTTATTGCTGTCTAGATTATGCACAGATATATG
ATGTTGTTAGGTACAGACTGCACCGCATGAGGAAAAAGCTGAAGGACGAGTTGGAAGACAAGAACACTGTTCAAGAGTACACATGCCCCAACTGTGGAAG
AAGATACAATGCTTTGGATGCTCTGCGCTTGATGTCTCTAGTTGACGAGTACTTCCACTGTGAGAATTGTGATGGGGAGCTTGTAGCTGAGAGTGACAAG
TTAGCTGCCCAAGAAGGTGGAGATGGAGATGACAATGCTAGGAGGCGGAGGCGTGAAAAATTAAAAGACATGCTTCAGAAAATGGAGGTACAACTTAAGC
CATTAATGGCTCAACTTAGCAGGGTGAAAGATTTACCTGTCCCTGAATTTGGGAGTCTTCAAGAATGGCAAATTCATGCAAGTGCTGCTGGCCGTGCTGC
AAATGGTGATTCTAGTTACAATGATCCCTCCAGATCTTCTCAAGGGTATGGTGGAACACCAATGCCATTTCTGGGAGAGACAAAGGTTGAAGTTTCGTTT
TCTGGTGTTGAAGGCAAGGAGGATCTCAAATCTGAAACTGCAAGTACCGGTCTGAAAGTTTTACCACCATGGATGATCAAGCAGGGAATGAACCTTACGA
AAGAGCAACGTGGAGAGGTCAAGCAGGGGTCTAAGATGGATGACAGTTCAGCAGCAGCAGAGCCCCCAGATGACAAAAAGATTTCTATTGAGAATGATGA
CAAGATAAAGGATGAGTATGTTAAAGCTTATTATGCTGCTCTGCTTCAGAAACAACGAGAAGCAGAAGAATCTGCTGAGAAACAACAGGAATTGTTACAG
ACATCCATCTCCAATGGTTTTTCCAAATCATCTTCTGATCGTCAAGTGGGCATGAAATCCAAACGCGAGGAGGATGATGAGCCAGATGATGATGTTGAAT
GGGAAGAGGCTCCAATTGGAGGCAACACAAGTGAAGGTTTTAAGGTTAATGACTTGAATGCTGAAGCTCCTGCTTCTGGAGAGGATGACGAAGATGATAT
AGACTGGGAAGAAGGTTGA
AA sequence
>Potri.015G051000.1 pacid=42775154 polypeptide=Potri.015G051000.1.p locus=Potri.015G051000 ID=Potri.015G051000.1.v4.1 annot-version=v4.1
MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALTRRQWVREEDLAKELKLHSKQLRRTLRFFEEEKLVTRDHRKETAKAAKMHNAA
VANTTDGHRTKEGDDKIKMHTHSYCCLDYAQIYDVVRYRLHRMRKKLKDELEDKNTVQEYTCPNCGRRYNALDALRLMSLVDEYFHCENCDGELVAESDK
LAAQEGGDGDDNARRRRREKLKDMLQKMEVQLKPLMAQLSRVKDLPVPEFGSLQEWQIHASAAGRAANGDSSYNDPSRSSQGYGGTPMPFLGETKVEVSF
SGVEGKEDLKSETASTGLKVLPPWMIKQGMNLTKEQRGEVKQGSKMDDSSAAAEPPDDKKISIENDDKIKDEYVKAYYAALLQKQREAEESAEKQQELLQ
TSISNGFSKSSSDRQVGMKSKREEDDEPDDDVEWEEAPIGGNTSEGFKVNDLNAEAPASGEDDEDDIDWEEG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G03280 Transcription factor TFIIE, al... Potri.015G051000
[exp]
0 1
AT5G61370 Pentatricopeptide repeat (PPR)... Potri.012G068400
[exp]
9.89 0.8868
AT2G03880 REME1 required for efficiency of mit... Potri.004G208000
[exp]
17.05 0.8722
AT1G18450 ATARP4 actin-related protein 4 (.1) Potri.012G061300
[exp]
20.49 0.8566 ARP901,ARP4.2
AT5G06540 Pentatricopeptide repeat (PPR)... Potri.016G065500
[exp]
21.35 0.8641
AT1G05670 Pentatricopeptide repeat (PPR-... Potri.006G223300
[exp]
21.49 0.8630
AT2G37310 Pentatricopeptide repeat (PPR)... Potri.006G216100
[exp]
22.36 0.8698
AT1G43760 DNAse I-like superfamily prote... Potri.002G000350
[exp]
23.97 0.8675
AT2G22070 pentatricopeptide (PPR) repeat... Potri.007G085500
[exp]
24.33 0.8619
AT3G25430 Polynucleotidyl transferase, r... Potri.014G177400
[exp]
25.92 0.8533
Potri.014G079500
[exp]
26.94 0.8110

Potri.015G051000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.