Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18490 585 / 0 Eukaryotic aspartyl protease family protein (.1) AT1G25510 530 / 0 Eukaryotic aspartyl protease family protein (.1) AT1G01300 370 / 8e-124 Eukaryotic aspartyl protease family protein (.1) AT3G61820 361 / 4e-120 Eukaryotic aspartyl protease family protein (.1) AT3G20015 360 / 4e-120 Eukaryotic aspartyl protease family protein (.1) AT2G03200 234 / 1e-71 Eukaryotic aspartyl protease family protein (.1) AT2G42980 231 / 1e-69 Eukaryotic aspartyl protease family protein (.1) AT3G59080 228 / 2e-68 Eukaryotic aspartyl protease family protein (.1.2) AT5G10770 219 / 1e-65 Eukaryotic aspartyl protease family protein (.1) AT5G10760 217 / 6e-65 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G128200 [exp] 549 / 0 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 377 / 3e-126 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 372 / 4e-124 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 370 / 9e-124 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 370 / 1e-123 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.008G118100 [exp] 323 / 4e-106 AT1G25510 373 / 8e-126 Eukaryotic aspartyl protease family protein (.1) Potri.005G204600 [exp] 249 / 4e-76 AT3G59080 686 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.006G232600 [exp] 231 / 3e-70 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 230 / 3e-70 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042978 [exp] 497 / 2e-173 AT3G18490 504 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 356 / 3e-118 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10010157 [exp] 332 / 2e-108 AT3G20015 545 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10017362 [exp] 329 / 2e-107 AT3G20015 549 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10032482 [exp] 320 / 2e-105 AT3G18490 339 / 2e-113 Eukaryotic aspartyl protease family protein (.1) Lus10007335 [exp] 258 / 2e-79 AT3G59080 698 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035961 [exp] 252 / 3e-78 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10025702 [exp] 256 / 2e-77 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10030246 [exp] 241 / 1e-74 AT1G01300 472 / 3e-165 Eukaryotic aspartyl protease family protein (.1) Lus10042426 [exp] 201 / 1e-58 AT5G10770 553 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF00026 [poplar] [flax] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Potri.015G051800.1 pacid=42776268 polypeptide=Potri.015G051800.1.p locus=Potri.015G051800 ID=Potri.015G051800.1.v4.1 annot-version=v4.1 ATGTCAGAACCAGCTTCAAAGGCATTCCTTCTATTCCTCACTCTCATTTTTCTCTTCTTCACCTCCACTTTACCTCGTGATTTACCAGATGCCACTACAA CAACAACGACAACAATCCTTGATGTCGCATCTTCTCTTCAACAAGCCCATAACATCCTCTCCTTTGATCTACAAACACAAAAATCCTCCACTCACACAAC AATCACCACATCCACCCCATCTTTCTCCAACTCTTCACTCTCTTTCTCCCTCGAACTCCATCCCCGCGAAACCATCTACAAAATCCACCACAAAGACTAC AAATCCTTAGTCCTCTCTCGACTCCACCGTGACACAGTCCGATTCAACTCACTCACAGCCAGACTCCAACTCGCCCTCGAAGACATCTCCAAATCCGACC TCAAACCCTTAGAAACCGAGATCAAACCCGAGGACTTATCCACTCCAGTCACTTCAGGTACAAGCCAAGGAAGCGGTGAGTACTTCACTCGAGTTGGTGT CGGTAACCCAGCAAGACAGTTTTACATGGTTTTGGACACAGGCAGTGACATTAACTGGCTACAATGTCAACCCTGTACAGACTGTTACCAGCAAACAGAT CCAATCTTTGATCCAACGGCGTCCTCTACTTACGCTCCTGTCACTTGTCAATCTCAACAGTGTAGCTCTTTAGAAATGTCGAGCTGTAGAAGTGGGCAGT GTCTTTATCAGGTTAACTACGGCGACGGGTCGTATACTTTCGGTGATTTTGCTACTGAATCGGTGTCGTTTGGGAATTCTGGGAGTGTTAAAAACGTTGC TTTAGGCTGTGGTCATGATAATGAAGGGTTGTTTGTGGGTGCTGCTGGTTTATTAGGTCTTGGTGGTGGCCCACTTTCGTTAACAAACCAGCTTAAAGCG ACGTCGTTTTCTTATTGTTTAGTGAATCGTGACTCGGCTGGATCGTCGACTTTGGACTTTAACTCGGCTCAACTCGGCGTTGATTCAGTCACTGCTCCTT TGATGAAGAACCGGAAGATTGATACTTTTTACTATGTGGGTCTCAGTGGAATGAGTGTCGGTGGGCAGATGGTGTCGATACCTGAGTCAACATTTCGATT GGACGAGTCAGGGAATGGTGGGATAATCGTTGACTGTGGAACAGCAATAACTCGGTTGCAGACTCAGGCTTACAATCCTCTGCGTGATGCATTCGTGAGG ATGACTCAGAATTTGAAACTCACTAGTGCTGTTGCATTGTTTGACACGTGTTATGATCTGTCTGGACAGGCAAGTGTAAGAGTCCCAACGGTGTCGTTTC ACTTCGCAGATGGGAAGTCCTGGAATTTGCCGGCCGCCAATTATTTGATCCCTGTGGATTCTGCTGGGACTTACTGCTTTGCATTTGCTCCAACGACGTC GTCTCTGTCTATAATCGGGAATGTACAGCAGCAGGGGACACGTGTCACATTTGACCTGGCAAATAACCGCATGGGATTCTCACCCAATAAATGTCAGTAG
AA sequence Show only first row Show all	>Potri.015G051800.1 pacid=42776268 polypeptide=Potri.015G051800.1.p locus=Potri.015G051800 ID=Potri.015G051800.1.v4.1 annot-version=v4.1 MSEPASKAFLLFLTLIFLFFTSTLPRDLPDATTTTTTTILDVASSLQQAHNILSFDLQTQKSSTHTTITTSTPSFSNSSLSFSLELHPRETIYKIHHKDY KSLVLSRLHRDTVRFNSLTARLQLALEDISKSDLKPLETEIKPEDLSTPVTSGTSQGSGEYFTRVGVGNPARQFYMVLDTGSDINWLQCQPCTDCYQQTD PIFDPTASSTYAPVTCQSQQCSSLEMSSCRSGQCLYQVNYGDGSYTFGDFATESVSFGNSGSVKNVALGCGHDNEGLFVGAAGLLGLGGGPLSLTNQLKA TSFSYCLVNRDSAGSSTLDFNSAQLGVDSVTAPLMKNRKIDTFYYVGLSGMSVGGQMVSIPESTFRLDESGNGGIIVDCGTAITRLQTQAYNPLRDAFVR MTQNLKLTSAVALFDTCYDLSGQASVRVPTVSFHFADGKSWNLPAANYLIPVDSAGTYCFAFAPTTSSLSIIGNVQQQGTRVTFDLANNRMGFSPNKCQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18490			Eukaryotic aspartyl protease f...		Potri.015G051800 [exp]	0	1
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Potri.019G033000 [exp]	1.41	0.8689
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Potri.012G131400 [exp]	2.23	0.8498
AT3G16070			unknown protein		Potri.001G182500 [exp]	3.60	0.8690
AT2G26870		NPC2	non-specific phospholipase C2 ...		Potri.001G275500 [exp]	4.89	0.8398
AT1G79720			Eukaryotic aspartyl protease f...		Potri.001G041700 [exp]	6.70	0.8202
AT4G28320		MAN5, AtMAN5	endo-beta-mannase 5, Glycosyl ...		Potri.006G009400 [exp]	8.00	0.8195
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.009G050700 [exp]	8.48	0.8365
AT3G49220			Plant invertase/pectin methyle...		Potri.015G013700 [exp]	9.27	0.7879	PME2.12
AT5G22740		ATCSLA2, ATCSLA...	CELLULOSE SYNTHASE-LIKE A 2, A...		Potri.009G149700 [exp]	9.48	0.8620	ATCSLA02.1
AT1G29730			Leucine-rich repeat transmembr...		Potri.010G155000 [exp]	16.37	0.8517

Compare expression of checked genes

Potri.015G051800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.