Plant FIBer expression Database

Potri.015G052200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G23060 490 / 6e-174 CaS calcium sensing receptor (.1)
AT3G59780 83 / 6e-17 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G128300
[exp]
75 / 3e-14 AT3G59780 610 / 0.0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009609
[exp]
440 / 7e-154 AT5G23060 466 / 3e-164 calcium sensing receptor (.1)
Lus10000867
[exp]
439 / 2e-153 AT5G23060 466 / 2e-164 calcium sensing receptor (.1)
Lus10027050
[exp]
84 / 3e-17 AT3G59780 562 / 0.0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
Lus10025587
[exp]
83 / 8e-17 AT3G59780 510 / 5e-173 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0031 Phosphatase PF00581 Rhodanese Rhodanese-like domain
Representative CDS sequence
>Potri.015G052200.5 pacid=42774823 polypeptide=Potri.015G052200.5.p locus=Potri.015G052200 ID=Potri.015G052200.5.v4.1 annot-version=v4.1
ATGGCAATGGAGATGGCCATAAGATCTTCATTTACAACAAGACTCTCTCCTCGTTCAACTTCTTCAACAACCAAACCTTCTTTCTTTAAACCTCATCAAT
TGAGACCCATCTCTGTATCACTGCCAACGTCAACCATCTCTCTCTTGTCTCTCTTTGCACCACCCAATGAAGCCAAAGCTCTTACTATTTCCAAGGACCA
GGTTGTCTCTACGCTTACTGATGTGGAGAAGACAATTGATCAGGCTGTGGAGTTTAGTTCAAGTGTATTGGACAGTGCACAGAAAGTTTTTGAAGGTGTC
ACTAATAGTTTGAAGCCTGGCATAGATGTTGCATTACCAATTGCAAAGCAAGCAGGAGAACAGGCAGTGAAGATTGCTTCTCCTGCAATTTATGAGGCTT
CAAAGAAAGCCCAAGAAGCTATTCAAAGTACTGGTATTGACACAGAACCAGTTCTTAGTGCTGCTAAGACACTAGTAGGTGCTGCTCAACAGACAACTAA
GGTGATTGAAGAGGCAAAGCCCATAGCTTCATCAACTGTTGAAACCATCACTTCGGCAGACCCCGTTGTGATTGTAGGAGCTGCTGGAGCAGTTTTTCTA
GCATACCTCCTCTTTCCATCCATATGGTCTGCTGTCTCATTCGGCCTGCGTGGTTACAAAGGTGAGATTACTCCAGCCCAAGTCCTTGATCTATTATCTA
CAAAAAATTACATTATGATCGACATTAGATCAGAGAAAGACAAGGAAAAGGCTGGCATCCCACGCCTTCCCTCCAGTGCTAAGAACCAGATGGTTTCGGT
CCCTTTGGAAGAACTGCCAAGCAAATTGAAAGGCATTGTCAGAAATGTCAAGAAACTAGAAGCTGAAATAGCAGCTTTAAAGATTTCATATCTGAAGAAA
ATTAACAAAGGTTCCAACATTGTCATCATGGACTCGTACTCAGATTCAGCAAAAATAGTTGCCAGAGTACTGACAAGTTTAGGTTTCAATAACTGCTGGA
CTGTTTCTGGTGGGTTTTCTGGAGGCAGAGGATGGTTACAAAGTTGGTTAGGAGCGGATTCATATAATGTATCTTTTACTGAGGTTCTCAGACCATCACG
AATAATCCCTGCAGCAGCCGGACGTGTTGGAACAGCCAGCTCAAAGTTACTTCCGGGTGGAGATTAA
AA sequence
>Potri.015G052200.5 pacid=42774823 polypeptide=Potri.015G052200.5.p locus=Potri.015G052200 ID=Potri.015G052200.5.v4.1 annot-version=v4.1
MAMEMAIRSSFTTRLSPRSTSSTTKPSFFKPHQLRPISVSLPTSTISLLSLFAPPNEAKALTISKDQVVSTLTDVEKTIDQAVEFSSSVLDSAQKVFEGV
TNSLKPGIDVALPIAKQAGEQAVKIASPAIYEASKKAQEAIQSTGIDTEPVLSAAKTLVGAAQQTTKVIEEAKPIASSTVETITSADPVVIVGAAGAVFL
AYLLFPSIWSAVSFGLRGYKGEITPAQVLDLLSTKNYIMIDIRSEKDKEKAGIPRLPSSAKNQMVSVPLEELPSKLKGIVRNVKKLEAEIAALKISYLKK
INKGSNIVIMDSYSDSAKIVARVLTSLGFNNCWTVSGGFSGGRGWLQSWLGADSYNVSFTEVLRPSRIIPAAAGRVGTASSKLLPGGD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G23060 CaS calcium sensing receptor (.1) Potri.015G052200
[exp]
0 1
AT2G22780 PMDH1 peroxisomal NAD-malate dehydro... Potri.009G081600
[exp]
1.41 0.9885 MDHG.1
AT4G37930 SHMT1, STM, SHM... SERINE HYDROXYMETHYLTRANSFERAS... Potri.010G254700
[exp]
2.82 0.9813 SHMT7,SHM1.3
AT1G03130 PSAD-2 photosystem I subunit D-2 (.1) Potri.010G089400
[exp]
3.00 0.9836 PSAD1.1
AT5G55570 unknown protein Potri.011G085700
[exp]
3.74 0.9840
AT2G47910 CRR6 chlororespiratory reduction 6 ... Potri.006G060100
[exp]
4.58 0.9817
AT4G03520 ATHM2 Thioredoxin superfamily protei... Potri.005G186800
[exp]
5.47 0.9829 PtrTrxm9
AT4G03520 ATHM2 Thioredoxin superfamily protei... Potri.002G073000
[exp]
6.92 0.9793
AT5G57040 Lactoylglutathione lyase / gly... Potri.018G056200
[exp]
7.21 0.9792
AT5G36700 ATPGLP1, 2-PHOS... 2-phosphoglycolate phosphatase... Potri.010G180400
[exp]
7.34 0.9811
AT4G04640 ATPC1 ATPase, F1 complex, gamma subu... Potri.004G014850
[exp]
7.74 0.9823

Potri.015G052200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.