Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48950 409 / 2e-133 C3HC zinc finger-like (.1) AT1G17210 176 / 2e-45 ATILP1 ARABIDOPSIS IAP-LIKE PROTEIN, IAP-like protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G058550 [exp] 402 / 9e-133 AT1G48950 159 / 1e-42 C3HC zinc finger-like (.1) Potri.011G081200 [exp] 215 / 2e-58 AT1G17210 905 / 0.0 ARABIDOPSIS IAP-LIKE PROTEIN, IAP-like protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038947 [exp] 463 / 2e-154 AT1G48950 487 / 2e-166 C3HC zinc finger-like (.1) Lus10027238 [exp] 461 / 3e-153 AT1G48950 489 / 8e-167 C3HC zinc finger-like (.1) Lus10038518 [exp] 204 / 6e-55 AT1G17210 855 / 0.0 ARABIDOPSIS IAP-LIKE PROTEIN, IAP-like protein 1 (.1) Lus10023288 [exp] 202 / 4e-54 AT1G17210 848 / 0.0 ARABIDOPSIS IAP-LIKE PROTEIN, IAP-like protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0417 [poplar] [flax] BIR-like PF07967 [poplar] [flax] zf-C3HC C3HC zinc finger-like
Representative CDS sequence Show only first row Show all	>Potri.015G052400.5 pacid=42775854 polypeptide=Potri.015G052400.5.p locus=Potri.015G052400 ID=Potri.015G052400.5.v4.1 annot-version=v4.1 ATGGAAGAGGATCCAGAGAAGAGATTCCACTCTATCATGGACAAGCTCCTTAACGCTCCTTCTTCGAAATCCATCTCCAATCCCAGTTCACCAATATCAT GTGGAGCTATACAAATATCATCACCATCAAGAGGCAAAAAACGAGACAATCGTGAGTCTGCATTAGCACTAGTGGAACATGTTTCTTCAGCTGACGCTCC TTTGTGTAGGCCCTGGGACAGGGGAGATCTTATGAGGAGGCTTGCTACTTTTAAGTCTATGACCTGGTTCGCTAAGCCCAAGGTGGTAAGTGCTGTGGAT TGTGCGAGAAGGGGATGGATCAATTTGGATATGGATATCATAGCATGTGAAGCATGTGGAGCTCGTCTCCTATTTTCTACTCCATCATCTTGGTCACAGC AACAAGTTGAGAAGGCAGCATTGGTATTTAGTTTGAAGCTGGATAATGGACACAAACTATTGTGTCCATGGATTGACAATGCCTGTGATGAAAGATTGGC AGAATTTCCTCCCACTCCACCTCAAGTTTTAGTTGATAAGTTCAGAGAACGTTCTTGTGCGCTCTTACGACTTTTAGCTCTTCCACTGATTTCATCTTCA GCCATTGAATACATAAGATGCCCTCAGCTGGAAGAATTTCTTGGACAATCTCCAACCCTGGAATTTGGCAAAATGTCTGCCAACCTATCACAAATACAAT TCCTTGGCAATGATTGTGATGCTGGTTTTGCCAACTTGTACTATGAGGCACAAAAGCTCATAAGTTTATGTGGCTGGGAACCGCGTGCGCTGCCTTACGT TGTTGACTGCAATGACAAACCAACACAGCCTGTTAAGGATACTGGCTTCACAGATTCATTCCATATGGTCATCAATGGGCAGCATCCAAGTATTCGAGTC CGCTCTGTTGCTACTGAGCAAAGCGTTGACACAAATGAAGAATCTGGTTCTTGTAGTGGGCCACATGCTGATTCTAATGCTGTTGTTTTAGATTGCAGGT TCTGTGGGGCGAGTGTGGGACTATGGACTTTTTCTATGGTTCCACGTCCTTTAGAGTTGTTTAAATTGGTCGGTTATGCAGAAGTCAATAATAACAAGAA TTCTGGACAAGATTCAGCTAATGAAAATCATGTTGACAACAGGGGAGTCATTGGAAACTCTGCATCAAATGGTGCATTGTCTTCTATGCATAGACCATCA TATTTAAGTTTCACAATTGCTGGGGGTCCGCCCCCAACAAAACAGAACTTCAAAGCAACAATTTCATTGCCTGTTATTGGCCGGAATTTAAGGGCCAGGT TTTCTTACGATTCTGATTTTAGGGATCGTACATGTGATAACCAAGAATTTTCTCAATCTGGATCTGAAAACAAGAATCTATCTTCAGAGGAACGGGAATC TGCAAAGCACAATTTTGGTGAACAAGTTTCTCTGCTCGAAGCTGTGGGTCTGTTAAAGAGCAAAACACATGACCAGGGGCAGTGTAGTTATGCCAGTGGT GACCAATCTTCTTGTTTGAACTCTGGAAGTAGTGAAGGTGATGCACTTAGAAAAGAGAATAACTCCAAGATGTCTTTGGAAGGGATAGATATCACTAGAG AACCAGCTTTTCCTGAAACTGCTGGGTATGATTCTGCTGTGGAATGTCTGACTCAGAATCCACCAAATACAGTGCATGGTTATGATGCAACTGATCAGCT GCCTGAAAATTCAAACAATATTGAATCACATGATTCAGTAGTGGGGGTTTCTGGAGTTTCTCAAGTTAGTGCATCTTCTATTTCTGGCTCTGCTGCCATT TCCCCAATTGGAAGTGGAAAACGTAGTGAAAGTAACTCCTTAGAGATGGTGACTTCATCTATCAATCATGATGAACAAATTCCAGGAGCGGATATTTCAG GCAGCAATGTTGCCTGTCAGATTGGTATGAGAGGAGGTGAAACTTGTTCTGATATTGAAAACACTTTAGCTACTCAAGAAAAAAGCCAAGAAGGCACCAC AGGAGTGCAGTTTCCTGTGAACAGTGAAGTTGTGGCCAACAGTACAGGAAAGGATCCTAAGAAACTGGCATTAGACAAAGCTTTGGGATTTGATCCAATC AGACAGCACAGACATTTTTGCCCCTGGATTATATCAACAAGCAGTGGGGCACCTGGTTGGCAACAAACACTATCTGCTTTAGGGCGTCAGAAAGAGTTTT CTCTTCCTTCTACAAATTCTCCATCTTCCTCCCTGAATAAGGTAATGAAAAATTTTACACCCCTTTTGGTGAATCGCTTTTGTGCTAACTATGTGTCGTG GAAAGTGATGGATAGAAGCATGGTGGATTTGATATGGCTGGTTGCCAGCTGA
AA sequence Show only first row Show all	>Potri.015G052400.5 pacid=42775854 polypeptide=Potri.015G052400.5.p locus=Potri.015G052400 ID=Potri.015G052400.5.v4.1 annot-version=v4.1 MEEDPEKRFHSIMDKLLNAPSSKSISNPSSPISCGAIQISSPSRGKKRDNRESALALVEHVSSADAPLCRPWDRGDLMRRLATFKSMTWFAKPKVVSAVD CARRGWINLDMDIIACEACGARLLFSTPSSWSQQQVEKAALVFSLKLDNGHKLLCPWIDNACDERLAEFPPTPPQVLVDKFRERSCALLRLLALPLISSS AIEYIRCPQLEEFLGQSPTLEFGKMSANLSQIQFLGNDCDAGFANLYYEAQKLISLCGWEPRALPYVVDCNDKPTQPVKDTGFTDSFHMVINGQHPSIRV RSVATEQSVDTNEESGSCSGPHADSNAVVLDCRFCGASVGLWTFSMVPRPLELFKLVGYAEVNNNKNSGQDSANENHVDNRGVIGNSASNGALSSMHRPS YLSFTIAGGPPPTKQNFKATISLPVIGRNLRARFSYDSDFRDRTCDNQEFSQSGSENKNLSSEERESAKHNFGEQVSLLEAVGLLKSKTHDQGQCSYASG DQSSCLNSGSSEGDALRKENNSKMSLEGIDITREPAFPETAGYDSAVECLTQNPPNTVHGYDATDQLPENSNNIESHDSVVGVSGVSQVSASSISGSAAI SPIGSGKRSESNSLEMVTSSINHDEQIPGADISGSNVACQIGMRGGETCSDIENTLATQEKSQEGTTGVQFPVNSEVVANSTGKDPKKLALDKALGFDPI RQHRHFCPWIISTSSGAPGWQQTLSALGRQKEFSLPSTNSPSSSLNKVMKNFTPLLVNRFCANYVSWKVMDRSMVDLIWLVAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48950			C3HC zinc finger-like (.1)		Potri.015G052400 [exp]	0	1
AT3G06920			Tetratricopeptide repeat (TPR)...		Potri.010G014100 [exp]	5.09	0.8342
AT5G05800			unknown protein		Potri.015G137800 [exp]	5.19	0.8277
AT3G46960			RNA helicase, ATP-dependent, S...		Potri.009G041200 [exp]	5.47	0.8212
AT3G26090		ATRGS1, RGS1	REGULATOR OF G-PROTEIN SIGNALI...		Potri.008G181500 [exp]	5.91	0.8138
AT5G66180			S-adenosyl-L-methionine-depend...		Potri.007G056800 [exp]	6.24	0.8009
AT1G31840			Tetratricopeptide repeat (TPR)...		Potri.015G036400 [exp]	8.12	0.8154
AT5G35910			Polynucleotidyl transferase, r...		Potri.013G062800 [exp]	8.94	0.8244
AT2G40700			P-loop containing nucleoside t...		Potri.019G059100 [exp]	12.24	0.7616
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Potri.008G103000 [exp]	13.74	0.8106
AT5G53110			RING/U-box superfamily protein...		Potri.012G011500 [exp]	14.07	0.7591

Compare expression of checked genes

Potri.015G052400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.