Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23100 293 / 3e-100 Protein of unknown function, DUF617 (.1) AT3G25640 233 / 1e-76 Protein of unknown function, DUF617 (.1) AT2G41660 185 / 1e-57 MIZ1 mizu-kussei 1, Protein of unknown function, DUF617 (.1) AT4G39610 169 / 1e-51 Protein of unknown function, DUF617 (.1) AT2G21990 165 / 3e-50 Protein of unknown function, DUF617 (.1) AT5G06990 162 / 4e-49 Protein of unknown function, DUF617 (.1) AT2G37880 154 / 2e-46 Protein of unknown function, DUF617 (.1) AT5G42680 145 / 1e-42 Protein of unknown function, DUF617 (.1.2) AT1G21050 137 / 1e-39 Protein of unknown function, DUF617 (.1) AT1G76610 124 / 1e-34 Protein of unknown function, DUF617 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G058300 [exp] 434 / 2e-156 AT5G23100 261 / 7e-88 Protein of unknown function, DUF617 (.1) Potri.010G131600 [exp] 291 / 7e-100 AT3G25640 249 / 1e-82 Protein of unknown function, DUF617 (.1) Potri.008G114500 [exp] 266 / 5e-90 AT3G25640 228 / 2e-74 Protein of unknown function, DUF617 (.1) Potri.006G048800 [exp] 197 / 8e-63 AT2G41660 241 / 3e-79 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.016G056800 [exp] 193 / 4e-61 AT2G41660 202 / 6e-64 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.005G084000 [exp] 169 / 4e-52 AT2G21990 327 / 4e-114 Protein of unknown function, DUF617 (.1) Potri.001G031900 [exp] 169 / 7e-52 AT5G06990 275 / 6e-93 Protein of unknown function, DUF617 (.1) Potri.003G193700 [exp] 168 / 1e-51 AT5G06990 328 / 6e-114 Protein of unknown function, DUF617 (.1) Potri.014G035000 [exp] 155 / 1e-46 AT5G42680 286 / 2e-98 Protein of unknown function, DUF617 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027241 [exp] 294 / 9e-101 AT5G23100 270 / 1e-90 Protein of unknown function, DUF617 (.1) Lus10000863 [exp] 285 / 4e-97 AT5G23100 276 / 3e-93 Protein of unknown function, DUF617 (.1) Lus10009615 [exp] 278 / 1e-94 AT5G23100 258 / 4e-86 Protein of unknown function, DUF617 (.1) Lus10034386 [exp] 243 / 2e-80 AT3G25640 268 / 3e-90 Protein of unknown function, DUF617 (.1) Lus10019166 [exp] 241 / 1e-79 AT3G25640 258 / 2e-86 Protein of unknown function, DUF617 (.1) Lus10035443 [exp] 205 / 4e-65 AT2G41660 248 / 4e-81 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10031059 [exp] 204 / 7e-65 AT2G41660 258 / 4e-85 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10035847 [exp] 172 / 3e-52 AT2G21990 306 / 1e-104 Protein of unknown function, DUF617 (.1) Lus10036630 [exp] 171 / 1e-51 AT4G39610 308 / 5e-105 Protein of unknown function, DUF617 (.1) Lus10038951 [exp] 160 / 6e-50 AT5G23100 159 / 1e-49 Protein of unknown function, DUF617 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04759 [poplar] [flax] DUF617 Protein of unknown function, DUF617
Representative CDS sequence Show only first row Show all	>Potri.015G053000.1 pacid=42775772 polypeptide=Potri.015G053000.1.p locus=Potri.015G053000 ID=Potri.015G053000.1.v4.1 annot-version=v4.1 ATGGCTAGAGCATCACAAGACTCTTCCTCCAAGTGGCACTTCCACTGGACCAAAAAGGTTGGAAACGAAGATGATGAAGTTCCAATCTTTAAGTCCTCAA ACACCATTGAAGAAGAAAAAAAGGAAAATGTTAAGAGCCATGTAGGAATGTCAACCCCAAAGAAAAAACTACCAGCAGTAGCAGTTGCTAGGCTCCGATC CGTTGTTACAGCCCTTGGTAAGAACCGATCAAGCCTCCCACTGGGGCTTGGATCCCGAGTTGTAGGTACCCTTTTTGGATATCGCCGTGGTCATGTCCAT TTTGCATTTCAAAAGGATCCCAATTCACCTCCGGCTTTCCTTATTGAACTTGCTACACCAATAAGTGGATTGGTTAGAGAGATGGCATCTGGGTTAGTCA GAATTGCCTTGGAATGTGACAAAGAGAAAGAAGAGGAAAAGAAAGCTGTGAGATTGCAGGAAGAACCAATGTGGAGGACTTATTGCAATGGTAAGAAATG TGGTTTCGCTACTAGGAAGGAATGTGGGCCTAAAGAATGGAAGTTATTGAAAGCTGTAGAGCCAATTTCAATGGGTGCAGGGGTTTTGCCAGGGTGTGCA ACTGAGGCTGGAGCTGATGGTGAACTCATGTATATGAGAGCTAAATTTGAGAGAATTGTGGGCTCTAGAGATTCTGAGGCTTTCTACATGATGAATCCTG ATAGCAATGGAGCTCCTGAGCTCAGTATCTATCTACTTCGAGTCTAA
AA sequence Show only first row Show all	>Potri.015G053000.1 pacid=42775772 polypeptide=Potri.015G053000.1.p locus=Potri.015G053000 ID=Potri.015G053000.1.v4.1 annot-version=v4.1 MARASQDSSSKWHFHWTKKVGNEDDEVPIFKSSNTIEEEKKENVKSHVGMSTPKKKLPAVAVARLRSVVTALGKNRSSLPLGLGSRVVGTLFGYRRGHVH FAFQKDPNSPPAFLIELATPISGLVREMASGLVRIALECDKEKEEEKKAVRLQEEPMWRTYCNGKKCGFATRKECGPKEWKLLKAVEPISMGAGVLPGCA TEAGADGELMYMRAKFERIVGSRDSEAFYMMNPDSNGAPELSIYLLRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23100			Protein of unknown function, D...		Potri.015G053000 [exp]	0	1
AT5G02140			Pathogenesis-related thaumatin...		Potri.006G088100 [exp]	3.46	0.9722
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340600 [exp]	4.24	0.9733
AT1G29380			Carbohydrate-binding X8 domain...		Potri.011G078500 [exp]	4.47	0.9627
AT2G27140			HSP20-like chaperones superfam...		Potri.009G153000 [exp]	7.74	0.9710
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.006G256600 [exp]	10.09	0.9676	Pt-PME2.7
AT1G63310			unknown protein		Potri.001G452900 [exp]	12.48	0.9685
					Potri.003G156000 [exp]	12.64	0.9435
AT1G29380			Carbohydrate-binding X8 domain...		Potri.001G353400 [exp]	12.72	0.9521
AT2G35585			unknown protein		Potri.010G101500 [exp]	13.22	0.9458
AT1G54860			Glycoprotein membrane precurso...		Potri.005G034200 [exp]	13.41	0.9680

Compare expression of checked genes

Potri.015G053000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.