Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ARP4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18450 682 / 0 ATARP4 actin-related protein 4 (.1) AT5G09810 283 / 4e-92 ACT2/7, ACT7 actin 7 (.1) AT3G53750 281 / 1e-91 ACT3 actin 3 (.1) AT2G37620 281 / 1e-91 AAC1, ACT1 ARABIDOPSIS ACTIN 1, actin 1 (.1.2) AT1G49240 277 / 4e-90 FIZ1, ACT8 FRIZZY AND KINKED SHOOTS, actin 8 (.1) AT3G18780 277 / 4e-90 FIZ2, LSR2, ENL2, DER1, ACT2 LIGHT STRESS-REGULATED 2, FRIZZY AND KINKED SHOOTS 2, ENHANCER OF LRX1 2, DEFORMED ROOT HAIRS 1, actin 2 (.1.2) AT3G12110 277 / 5e-90 ACT11 actin-11 (.1) AT5G59370 277 / 7e-90 ACT4 actin 4 (.1.2) AT3G46520 277 / 7e-90 ACT12 actin-12 (.1) AT2G42100 269 / 8e-87 Actin-like ATPase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G061300 [exp] 776 / 0 AT1G18450 705 / 0.0 actin-related protein 4 (.1) Potri.001G453600 [exp] 278 / 1e-90 AT5G09810 769 / 0.0 actin 7 (.1) Potri.001G309500 [exp] 278 / 1e-90 AT5G09810 775 / 0.0 actin 7 (.1) Potri.019G010400 [exp] 278 / 2e-90 AT5G09810 774 / 0.0 actin 7 (.1) Potri.011G148000 [exp] 277 / 5e-90 AT5G09810 731 / 0.0 actin 7 (.1) Potri.008G055500 [exp] 277 / 7e-90 AT3G12110 765 / 0.0 actin-11 (.1) Potri.010G204300 [exp] 276 / 8e-90 AT3G12110 733 / 0.0 actin-11 (.1) Potri.016G045500 [exp] 275 / 4e-89 AT3G12110 767 / 0.0 actin-11 (.1) Potri.006G192700 [exp] 275 / 4e-89 AT3G12110 767 / 0.0 actin-11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032484 [exp] 701 / 0 AT1G18450 690 / 0.0 actin-related protein 4 (.1) Lus10042980 [exp] 583 / 0 AT1G18450 578 / 0.0 actin-related protein 4 (.1) Lus10005819 [exp] 283 / 2e-92 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005820 [exp] 283 / 2e-92 AT5G09810 778 / 0.0 actin 7 (.1) Lus10006783 [exp] 283 / 2e-92 AT5G09810 778 / 0.0 actin 7 (.1) Lus10016558 [exp] 278 / 2e-90 AT3G12110 768 / 0.0 actin-11 (.1) Lus10040826 [exp] 278 / 2e-90 AT3G12110 768 / 0.0 actin-11 (.1) Lus10005457 [exp] 278 / 2e-90 AT3G12110 768 / 0.0 actin-11 (.1) Lus10029286 [exp] 278 / 2e-90 AT3G46520 768 / 0.0 actin-12 (.1) Lus10016259 [exp] 278 / 3e-90 AT3G46520 767 / 0.0 actin-12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF00022 [poplar] [flax] Actin Actin
Representative CDS sequence Show only first row Show all	>Potri.015G053100.1 pacid=42776136 polypeptide=Potri.015G053100.1.p locus=Potri.015G053100 ID=Potri.015G053100.1.v4.1 annot-version=v4.1 ATGTACGGTGGTGATGAAGTATCAGCTATAGTCATTGACTTGGGCTCACACACTTGCAAAGTTGGTTATGCCGGCGAGGACGCACCGAAGGCCGTCTTTC CTTCTGTTGTTGGGTCGACGGATCAAATGGACGTTGATGACACTACAAGCAAATGTAAGTTATATGTAGGATCTCAGGCTTTAGGGTTTCGTCGAGACCA TATGGAGGTGTTATCACCTTTTAAGGATGGGATCGTTGCTGACTGGGATATGGTTGACAACATATGGAATCATGCTTTCAGAGAGTGTCTATTGATTGAC CCAAAGGAGCACCCGATGCTACTTGCAGAACCTTCATCCAACAGTCAACAACAGAGAGAAAGGACAGCAGAGCTTATTTTTGAAAAGTACAATGTTCCTG CATTATTTTTGGCCAAGAATGCTGTTCTAACATCTTTTGCATCAGGACGTGCTACCTCGCTAGTTGTTGATGGTGGTGGAGGATCAACTACAATTGCCCC AGTCCATGATGGTTATGTTCTTCAAAAGGCAGTGGCCTCTTCTCCTATTGGAGGAGAACTTCTTACTGATTGCTTGCTGAAAAGCTTGGAGAGCAAAGGT GTCATGATAAAACCAAGGTACTCTTTCAAAAGAAAGGAAATACAGCTGGGTGTGTTTCAGACGGTGGATCTTGATTTTCCAAGTACAACTGAAAGCTATA GACTCTACTCTCAGAGAGTGATTGCAAGTGATATCAAGGAATGTGTGTGTCGAGCCCCAGATACACCATATGATGAAAGTTCATACTCAAACATTCCAAT GACTCCATATGAGCTTCCTGACGGCCAGACAATTGAAATTGGAGCTGATAGATTCAAGATTCCAGATATTCTATTCAATCCATCCTTGATTCAGACAATT CCTGGTATGGATAATTTTGTGGAGATTGCTTCTAGTGCTCGTGGTTTGCCGCAAATGGCTATTGAAAGCATTAATAAGTGTGATGTTGATATCCGAAGAG AACTGTTTAGTAGTATACTGCTTGCTGGTGGAACAGCATCAATGCAACAGTTGAAGGAACGACTTGAGAAAGATTTGCTTGAGGAGTCTCCTCCAGCTGC CAGAGTTAAAGTGCTGGCTAGTGGAAATGCAACTGAAAGGAGATTCAGTGTATGGATAGGAGGTAGTATACTGGCATCTCTTGGTTCATTCCAGCAGACG TGGTTCTCCAAGTCTGAGTATGAAGAGCATGGGGTGTCTTATGTACAAAGAAAATGCCCTTGA
AA sequence Show only first row Show all	>Potri.015G053100.1 pacid=42776136 polypeptide=Potri.015G053100.1.p locus=Potri.015G053100 ID=Potri.015G053100.1.v4.1 annot-version=v4.1 MYGGDEVSAIVIDLGSHTCKVGYAGEDAPKAVFPSVVGSTDQMDVDDTTSKCKLYVGSQALGFRRDHMEVLSPFKDGIVADWDMVDNIWNHAFRECLLID PKEHPMLLAEPSSNSQQQRERTAELIFEKYNVPALFLAKNAVLTSFASGRATSLVVDGGGGSTTIAPVHDGYVLQKAVASSPIGGELLTDCLLKSLESKG VMIKPRYSFKRKEIQLGVFQTVDLDFPSTTESYRLYSQRVIASDIKECVCRAPDTPYDESSYSNIPMTPYELPDGQTIEIGADRFKIPDILFNPSLIQTI PGMDNFVEIASSARGLPQMAIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPPAARVKVLASGNATERRFSVWIGGSILASLGSFQQT WFSKSEYEEHGVSYVQRKCP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18450		ATARP4	actin-related protein 4 (.1)		Potri.015G053100 [exp]	0	1	Pt-ARP4.1
AT5G01660			unknown protein		Potri.016G127600 [exp]	2.82	0.7903
AT5G05490		SYN1 BP5, SYN1 ...	SYNAPTIC 1, DETERMINATE, INFER...		Potri.008G072300 [exp]	7.48	0.7092
AT2G02170			Remorin family protein (.1.2)		Potri.008G144300 [exp]	7.74	0.7153
AT4G20020			unknown protein		Potri.004G218650 [exp]	8.66	0.7974
AT3G07060		EMB1974	embryo defective 1974, NHL dom...		Potri.002G241366 [exp]	9.16	0.8086
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Potri.009G047500 [exp]	9.53	0.7489
AT2G25570			binding (.1.2.3)		Potri.001G219400 [exp]	13.71	0.6550
AT1G15200			protein-protein interaction re...		Potri.003G021900 [exp]	14.38	0.6782
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.006G271400 [exp]	14.83	0.7629
AT1G27090			glycine-rich protein (.1)		Potri.008G194200 [exp]	14.96	0.6940

Compare expression of checked genes

Potri.015G053100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.