Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49050 611 / 0 Eukaryotic aspartyl protease family protein (.1.2) AT1G77480 323 / 7e-105 Eukaryotic aspartyl protease family protein (.1.2) AT1G44130 312 / 3e-101 Eukaryotic aspartyl protease family protein (.1) AT4G33490 312 / 6e-101 Eukaryotic aspartyl protease family protein (.1.2) AT2G36670 149 / 6e-39 Eukaryotic aspartyl protease family protein (.1.2) AT5G22850 149 / 9e-39 Eukaryotic aspartyl protease family protein (.1) AT5G43100 150 / 1e-38 Eukaryotic aspartyl protease family protein (.1) AT3G02740 149 / 1e-38 Eukaryotic aspartyl protease family protein (.1) AT1G65240 145 / 1e-37 Eukaryotic aspartyl protease family protein (.1) AT3G50050 143 / 3e-36 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G179900 [exp] 306 / 1e-98 AT1G44130 501 / 2e-177 Eukaryotic aspartyl protease family protein (.1) Potri.002G081400 [exp] 301 / 4e-96 AT1G44130 449 / 1e-156 Eukaryotic aspartyl protease family protein (.1) Potri.005G069600 [exp] 286 / 6e-91 AT4G33490 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.007G099200 [exp] 275 / 1e-86 AT4G33490 521 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.007G099301 [exp] 264 / 4e-82 AT4G33490 503 / 6e-178 Eukaryotic aspartyl protease family protein (.1.2) Potri.006G118800 [exp] 145 / 3e-37 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.014G020200 [exp] 146 / 4e-37 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 143 / 1e-36 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 142 / 2e-36 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042982 [exp] 674 / 0 AT1G49050 569 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10032485 [exp] 563 / 0 AT1G49050 475 / 6e-163 Eukaryotic aspartyl protease family protein (.1.2) Lus10033503 [exp] 313 / 7e-101 AT4G33490 560 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10020874 [exp] 313 / 2e-100 AT4G33490 563 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10018146 [exp] 303 / 3e-97 AT1G77480 460 / 1e-160 Eukaryotic aspartyl protease family protein (.1.2) Lus10025687 [exp] 298 / 2e-95 AT1G77480 463 / 5e-162 Eukaryotic aspartyl protease family protein (.1.2) Lus10018148 [exp] 162 / 6e-45 AT1G44130 227 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10014391 [exp] 158 / 7e-42 AT2G36670 598 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10021397 [exp] 153 / 3e-40 AT5G22850 677 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10005356 [exp] 152 / 9e-40 AT5G22850 669 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF14543 [poplar] [flax] TAXi_N Xylanase inhibitor N-terminal
Representative CDS sequence Show only first row Show all	>Potri.015G053300.2 pacid=42776652 polypeptide=Potri.015G053300.2.p locus=Potri.015G053300 ID=Potri.015G053300.2.v4.1 annot-version=v4.1 ATGGAGTCTGATGATGATCAGTCACCGCAATTAAAAGGGGTAGTCATAATTTCACTTCCACCACCAGATAACCCGTCTTTAGGCAAAACCATCACTGCTT TTACACTCACTAATAATGACTACCCACAATCTCACCAAACCCCCCAAACCCATCAAGAAGACCAGCTTCCAATCTCATCACCACCACCACCACCATCTCA AAACTCTCAACTCCAATTTCCATCATCAAGACTCTTTCTTGGTACCCCAAGAAAGCTGTTGTCTTTTGTGTTTATCTCTCTTTTTGCTCTTGCTATTTAC AGTTCTTTGTTTACCAATACCTTTCAAGAATTGAAGAGTAATAATAATGATGATGATGATCAAAAGCCAAAGTCTTATGTGTTTCCTTTATATCACAAAT TGGGTATTCGTGAGATTCCACTGAATGATCTTGAGAATCATCTTAGGAGGTTTGTGTACAAGGAGAATTTGGTGGCATCTGTTGATCATTTGAATGGACC CCATAAAATTAGTAAGTTAGCTTCTTCAAATGCTGCTGCTGCAATGGATTCGTCCGCTATTTTTCCTGTTAGGGGCAATCTTTATCCAGATGGATTATAT TTCACATATATGCTTGTTGGGAGTCCTCCACAACCTTACTATCTTGATTTTGATACTGGAAGTGATTTAACATGGATCCAGTGTGATGCTCCTTGCACTA GCTGTGCCAAGGGTGCTAATGCCTGGTACAAGCCAAGAAGAGGTAATATAGTACCTCCAAAGGATTTGTTATGCATGGAAGTGCAAAGAAATCAAAAGGC TGGATATTGTGAAACATGCGATCAATGTGACTATGAGATTGAATATGCTGATCATAGCTCCTCCATGGGAGTTCTTGCTACAGACAAGCTTCTTTTAATG GTTGCAAATGGATCACTGACCAAGTTAAACTTCATTTTCGGGTGTGCATATGATCAGCAAGGCTTACTTTTGAAAACTCTGGTGAAGACAGATGGGATAC TTGGGCTAAGTAGAGCTAAAGTTAGTTTACCTTCTCAATTGGCGAGCCAGGGTATCATTAACAATGTCATAGGTCATTGCCTTACCACTGATTTAGGTGG TGGTGGATATATGTTTTTAGGTGATGATTTTGTTCCACGTTGGGGTATGGCTTGGGTCCCCATGCTTGACAGCCCTTCCATGGAATTCTATCATACAGAG GTTGTAAAATTGAATTATGGAAGCAGCCCACTCAGTTTAGGTGGGATGGAGAGCAGAGTGAAGCACATATTATTTGACAGTGGCAGTTCCTATACATATT TTCCAAAAGAAGCATATTCTGAATTGGTTGCTTCTCTTAATGAAGTTTCTGGGGCAGGACTTGTCCAAAGTACATCGGATACAACATTGCCCTTATGTTG GCGAGCTAATTTTCCTATCAGATCGGTTAAGGATGTAAAGAAGTTCTTCAAGACCTTAACCTTTCAATTTGGGACCAAATGGTTGGTTATCTCCACAAAG TTTCGGATACCTCCAGAGGGTTACTTGATGATGAGCGACAAAGGCAATGTGTGCTTGGGTATTCTTGAAGGAAGCAAAGTTCATGATGGATCCACAATTA TTCTCGGAGATATATCATTGCGGGGGCAGTTGGTGGTATATGATAACGTGAACAAGAAAATTGGTTGGACGCCCTCGGACTGTGCCAAGCCAAAAAGATC GGATAGCCTGCAATTCTTTGATGGTCTGCCATTCTTCGACGGGTAG
AA sequence Show only first row Show all	>Potri.015G053300.2 pacid=42776652 polypeptide=Potri.015G053300.2.p locus=Potri.015G053300 ID=Potri.015G053300.2.v4.1 annot-version=v4.1 MESDDDQSPQLKGVVIISLPPPDNPSLGKTITAFTLTNNDYPQSHQTPQTHQEDQLPISSPPPPPSQNSQLQFPSSRLFLGTPRKLLSFVFISLFALAIY SSLFTNTFQELKSNNNDDDDQKPKSYVFPLYHKLGIREIPLNDLENHLRRFVYKENLVASVDHLNGPHKISKLASSNAAAAMDSSAIFPVRGNLYPDGLY FTYMLVGSPPQPYYLDFDTGSDLTWIQCDAPCTSCAKGANAWYKPRRGNIVPPKDLLCMEVQRNQKAGYCETCDQCDYEIEYADHSSSMGVLATDKLLLM VANGSLTKLNFIFGCAYDQQGLLLKTLVKTDGILGLSRAKVSLPSQLASQGIINNVIGHCLTTDLGGGGYMFLGDDFVPRWGMAWVPMLDSPSMEFYHTE VVKLNYGSSPLSLGGMESRVKHILFDSGSSYTYFPKEAYSELVASLNEVSGAGLVQSTSDTTLPLCWRANFPIRSVKDVKKFFKTLTFQFGTKWLVISTK FRIPPEGYLMMSDKGNVCLGILEGSKVHDGSTIILGDISLRGQLVVYDNVNKKIGWTPSDCAKPKRSDSLQFFDGLPFFDG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49050			Eukaryotic aspartyl protease f...		Potri.015G053300 [exp]	0	1
AT1G34320			Protein of unknown function (D...		Potri.019G001500 [exp]	4.12	0.8929
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Potri.007G047400 [exp]	6.00	0.8457	WRKY15.1
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Potri.010G043900 [exp]	6.63	0.8584
AT5G04760	MYB		Duplicated homeodomain-like su...		Potri.010G240800 [exp]	8.83	0.8397
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Potri.005G075100 [exp]	11.48	0.8470
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.013G130800 [exp]	11.74	0.7494
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Potri.014G041300 [exp]	15.87	0.8025
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Potri.004G071100 [exp]	17.49	0.8029
AT3G07870			F-box and associated interacti...		Potri.002G223000 [exp]	18.89	0.8211
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.002G240000 [exp]	19.23	0.8421

Compare expression of checked genes

Potri.015G053300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.