Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18440 680 / 0 ATALMT9 aluminum-activated malate transporter 9 (.1) AT1G18420 621 / 0 Aluminium activated malate transporter family protein (.1) AT1G25480 527 / 0 Aluminium activated malate transporter family protein (.1) AT2G17470 519 / 5e-180 AtALMT6, ALMT6 ALuminium activated Malate Transporter 6, Aluminium activated malate transporter family protein (.1) AT1G68600 508 / 2e-175 Aluminium activated malate transporter family protein (.1) AT4G17970 224 / 9e-66 ATALMT12, ALMT12 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) AT5G46610 220 / 2e-64 Aluminium activated malate transporter family protein (.1.2.3) AT1G08430 213 / 5e-62 ALMT1, ATALMT1 ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, aluminum-activated malate transporter 1 (.1) AT1G08440 203 / 2e-58 Aluminium activated malate transporter family protein (.1) AT5G46600 199 / 1e-56 Aluminium activated malate transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G118600 [exp] 627 / 0 AT1G25480 646 / 0.0 Aluminium activated malate transporter family protein (.1) Potri.010G127400 [exp] 581 / 0 AT3G18440 588 / 0.0 aluminum-activated malate transporter 9 (.1) Potri.003G134100 [exp] 273 / 7e-85 AT3G18440 306 / 2e-97 aluminum-activated malate transporter 9 (.1) Potri.001G097300 [exp] 269 / 1e-82 AT3G18440 307 / 2e-97 aluminum-activated malate transporter 9 (.1) Potri.001G144300 [exp] 257 / 3e-78 AT4G17970 634 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Potri.003G145000 [exp] 216 / 2e-63 AT4G00910 484 / 5e-168 Aluminium activated malate transporter family protein (.1) Potri.001G217200 [exp] 215 / 4e-63 AT2G27240 445 / 6e-153 Aluminium activated malate transporter family protein (.1) Potri.001G217400 [exp] 214 / 1e-62 AT1G08440 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.001G085900 [exp] 211 / 2e-61 AT4G00910 508 / 9e-178 Aluminium activated malate transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027657 [exp] 763 / 0 AT3G18440 711 / 0.0 aluminum-activated malate transporter 9 (.1) Lus10034301 [exp] 498 / 2e-171 AT3G18440 555 / 0.0 aluminum-activated malate transporter 9 (.1) Lus10021694 [exp] 493 / 3e-169 AT1G25480 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10039926 [exp] 389 / 4e-132 AT3G18440 403 / 6e-138 aluminum-activated malate transporter 9 (.1) Lus10039925 [exp] 353 / 2e-118 AT3G18440 290 / 5e-94 aluminum-activated malate transporter 9 (.1) Lus10035037 [exp] 262 / 8e-81 AT1G25480 295 / 3e-94 Aluminium activated malate transporter family protein (.1) Lus10024710 [exp] 258 / 6e-80 AT3G18440 296 / 1e-94 aluminum-activated malate transporter 9 (.1) Lus10000898 [exp] 234 / 1e-69 AT4G17970 666 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10004556 [exp] 233 / 4e-69 AT4G17970 649 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10030975 [exp] 231 / 2e-68 AT4G17970 643 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [poplar] [flax] FUSC PF11744 [poplar] [flax] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Potri.015G053400.2 pacid=42776143 polypeptide=Potri.015G053400.2.p locus=Potri.015G053400 ID=Potri.015G053400.2.v4.1 annot-version=v4.1 ATGGCTGCGAAAATGGGATCTTTTAGGCACTCATTAGCCGAGAAAAGAGAGAGACTTCTTTCAACAACTAAGTGTTACTCAGAGATTGTCTTTCCTAATA TTCAAGAAGACCTAGATGAACCCACAAGAAATTGTTGCAGTTATAGATTCTTGTCTGATAAGATTGTTGGACTTTGTAAACAAGTTCAAGATGTTGCTTA TAGAGGATATCAAATGGGAAAATCTGATCCGAGAAAGATTGTTTTCTCTGCTAAAATGGGTTTGGCTTTGATGCTCATTTCTTTGTTGATTTTCTTGAAG GAGCCAATTAAAGAGCTCAGTCAACACTTTGTTTGGGCTATTCTTACTGTTGTGGTTGTCTTTGAATTCAGCATAGGAGCTACCCTTAGCAAAGGATTGA ACCGAGGGATTGGGACATTATCAGCTGGAGGGCTTGCTCTGGCAATGGCAGAGTTGTCTCATTTGGCTGGAGCGTGGGAGGAAGCTGTTATTATTCTTAG CATCTTCTCAGTAGGGTTTTGTGCAACTTATGCAAAACTGTACCCGTCAATGAAGCCTTATGAATATGGATTTCGAGTCTTCTTGTTGACATATTGTTTC ATAATGGTATCTGGGTATAGGACTGGGGAATTTAACCATACAGCTATATCACGATTTTTGCTTATTGCACTGGGTGCTGGGGTTGGCTTGGCAGTAAATA TATTGATTTATCCCATCTGGGCGGGGGAGGATTTACACGCCTTGGTGGCAAAAAATTTCACGAGAGTGGCAAATTCATTAGAAGGTTGTGTTAATGAGTA CCTTAACTGCACAGAATATGAAAGGATCCCCTCAAAAATCCTTACATACCAAGCTTCTGATGACCCACTCTATAGTGGCTACAGAGCAGCTGTAGAATCC ACAAGCCAAGAGGATGCTCTGATGGGTTTTGCTATTTGGGAGCCTCCTCATGGTCCTTACAAGTCATTTAACTATCCATGGAAAAATTATGTCAAAGTAA GCGGTGCATTGAGGCATTGTGCTTTCACGGTCATGGCGCTACACGGATGTATACTTTCTGAAATTCAGGCTCCAGCAGAACGAAGACAGGTCTTTCATCA TGAGCTGAAACGAGTAGGTGCTGAAGGAGCAAAAGTGTTGCTTGAACTCGGCAACAAAGTAAAAAGGATGGAGAAACTGGGTCCAGTAGACATACTATAT GAAGTACACGAGGCTGCAGAAGAGTTGCAAAATAAAGTGGATCGAAAATCATACCTTCTTGTCAATGCAGAGTCCTGGGAAATTGGGAATAGGGAAAAGG AGCTGGGAGAGCCCCAAGACTTGCTGACATTTGACGATGACGAAAATAAAGTCCTGGAATACAAGTCCCGTAGTGAAGCTGTCCTTGATCTCAGATCAAT GACTATACCAAAAAGTTGGGATAGGCATGCCCTCAGCATGGATGTCAAGCCCACCATCCATCCAACTATTTCCTCTGATGATGTGTTCAAGAAACAAATA TCTTGGCCTGCACGAAATTCATTTACCGCTGACACACTGCCACAAGTTGAAGAATCAAAAACTTATGAAAGTGCTAGTGCGTTGTCTTTAGCAACATTTA CATCCCTTTTAATTGAATTTGTTGCAAGGCTGCAAAATCTTGCAGACTCATTCGAAGAACTAAGTGAGAAAGCAAATTTCAAAGAACCTATTGAGCTGCC GATAGCTACAGAGGCTAATGGATTTTGGATCAGATTGCATAGAAGTCTGAAGTTCTGGAAATAA
AA sequence Show only first row Show all	>Potri.015G053400.2 pacid=42776143 polypeptide=Potri.015G053400.2.p locus=Potri.015G053400 ID=Potri.015G053400.2.v4.1 annot-version=v4.1 MAAKMGSFRHSLAEKRERLLSTTKCYSEIVFPNIQEDLDEPTRNCCSYRFLSDKIVGLCKQVQDVAYRGYQMGKSDPRKIVFSAKMGLALMLISLLIFLK EPIKELSQHFVWAILTVVVVFEFSIGATLSKGLNRGIGTLSAGGLALAMAELSHLAGAWEEAVIILSIFSVGFCATYAKLYPSMKPYEYGFRVFLLTYCF IMVSGYRTGEFNHTAISRFLLIALGAGVGLAVNILIYPIWAGEDLHALVAKNFTRVANSLEGCVNEYLNCTEYERIPSKILTYQASDDPLYSGYRAAVES TSQEDALMGFAIWEPPHGPYKSFNYPWKNYVKVSGALRHCAFTVMALHGCILSEIQAPAERRQVFHHELKRVGAEGAKVLLELGNKVKRMEKLGPVDILY EVHEAAEELQNKVDRKSYLLVNAESWEIGNREKELGEPQDLLTFDDDENKVLEYKSRSEAVLDLRSMTIPKSWDRHALSMDVKPTIHPTISSDDVFKKQI SWPARNSFTADTLPQVEESKTYESASALSLATFTSLLIEFVARLQNLADSFEELSEKANFKEPIELPIATEANGFWIRLHRSLKFWK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18440		ATALMT9	aluminum-activated malate tran...		Potri.015G053400 [exp]	0	1
AT2G30780			Tetratricopeptide repeat (TPR)...		Potri.006G243000 [exp]	3.31	0.8606
AT2G15695			Protein of unknown function DU...		Potri.009G103500 [exp]	4.24	0.8384
AT2G44410			RING/U-box superfamily protein...		Potri.009G023300 [exp]	7.48	0.8588
AT5G27710			unknown protein		Potri.013G017100 [exp]	7.74	0.8235
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Potri.018G127900 [exp]	10.53	0.8536
AT4G37020			unknown protein		Potri.007G043200 [exp]	12.48	0.8459
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050180 [exp]	16.00	0.8156
AT3G63340			Protein phosphatase 2C family ...		Potri.005G214500 [exp]	16.24	0.8233
AT1G80150			Tetratricopeptide repeat (TPR)...		Potri.001G171300 [exp]	18.16	0.8455
AT5G26160			unknown protein		Potri.006G224200 [exp]	21.21	0.7564

Compare expression of checked genes

Potri.015G053400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.