Plant FIBer expression Database

Potri.015G054900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G107000
[exp]
39 / 0.0002 AT5G38790 40 / 6e-05 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.015G054900.2 pacid=42776046 polypeptide=Potri.015G054900.2.p locus=Potri.015G054900 ID=Potri.015G054900.2.v4.1 annot-version=v4.1
ATGGAGTCTTCCCAAATCTTTGTCGCGGAAGAGTGTCACAGTAGTGAATCTGGGTGGACCATGTATCTTGGCTCCCCAACACAGGATGATGATGGTGGTG
ATGACGATGAGCACAGTGACGATGGAGATAGTTCTGATGGTGGTGGAAGTGACAATAAAAGTTACAATGATGACAGTGATGATTCTATGGCTTCTGATGC
TTCTTCTGGCCCAAGCCATCATGGCATAGCTCATTTGAAGCAGGAAGAAGATAAGCATGTTGGCAAGTATCAAATGGATCAGATGAAAGCTAACAAACCG
AAGGAAAACAAAAAAGCTGAAAGTGGGAGAAAGGAAGAGAAAGAGGCAATGGCGTTTATGGAAAAAAGAGCTAATAATGCTTCAGCTCAAAGTGGTTCCA
AGGTAAGGAAAACCTTTTTGATGAGCAAAAGGAAATAG
AA sequence
>Potri.015G054900.2 pacid=42776046 polypeptide=Potri.015G054900.2.p locus=Potri.015G054900 ID=Potri.015G054900.2.v4.1 annot-version=v4.1
MESSQIFVAEECHSSESGWTMYLGSPTQDDDGGDDDEHSDDGDSSDGGGSDNKSYNDDSDDSMASDASSGPSHHGIAHLKQEEDKHVGKYQMDQMKANKP
KENKKAESGRKEEKEAMAFMEKRANNASAQSGSKVRKTFLMSKRK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.015G054900
[exp]
0 1
AT1G33811 GDSL-like Lipase/Acylhydrolase... Potri.013G102400
[exp]
6.00 0.9959
AT3G01550 ATPPT2 phosphoenolpyruvate (pep)/phos... Potri.001G347300
[exp]
7.87 0.9959
AT5G62360 Plant invertase/pectin methyle... Potri.015G128400
[exp]
10.53 0.9957
AT1G05510 Protein of unknown function (D... Potri.014G148050
[exp]
12.12 0.9586
AT1G02050 LAP6 LESS ADHESIVE POLLEN 6, Chalco... Potri.002G141400
[exp]
12.36 0.9568 CHSL4
AT5G20630 ATGER3, GLP3A, ... GERMIN-LIKE PROTEIN 3, ARABIDO... Potri.006G142600
[exp]
12.80 0.9955
Potri.011G073116
[exp]
13.41 0.9955
AT4G33355 Bifunctional inhibitor/lipid-t... Potri.014G046500
[exp]
14.69 0.9955
Potri.014G075251
[exp]
15.87 0.9955
Potri.002G252200
[exp]
16.52 0.9943

Potri.015G054900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.