Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08160 600 / 0 ATPK3 serine/threonine protein kinase 3 (.1.2) AT2G32850 113 / 3e-27 Protein kinase superfamily protein (.1.2) AT4G04710 68 / 3e-12 CPK22 calcium-dependent protein kinase 22 (.1) AT2G25880 64 / 2e-11 ATAUR2 ataurora2 (.1.2) AT4G32830 61 / 2e-10 ATAUR1 ataurora1 (.1) AT2G23770 62 / 3e-10 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT1G12680 61 / 6e-10 PEPKR2 phosphoenolpyruvate carboxylase-related kinase 2 (.1) AT2G37840 60 / 2e-09 Protein kinase superfamily protein (.1.2) AT1G18890 59 / 2e-09 CPK10, ATCDPK1, AtCPK10 calcium-dependent protein kinase 1 (.1) AT1G74740 59 / 2e-09 CDPK1A, CPK30, ATCPK30 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G057300 [exp] 642 / 0 AT5G08160 610 / 0.0 serine/threonine protein kinase 3 (.1.2) Potri.001G228100 [exp] 113 / 2e-27 AT2G32850 717 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G247400 [exp] 64 / 6e-11 AT3G10660 253 / 2e-76 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.012G071700 [exp] 64 / 6e-11 AT1G74740 931 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.006G235000 [exp] 63 / 6e-11 AT4G32830 553 / 0.0 ataurora1 (.1) Potri.013G046100 [exp] 62 / 1e-10 AT3G04530 366 / 1e-128 phosphoenolpyruvate carboxylase kinase 2 (.1) Potri.015G066200 [exp] 62 / 3e-10 AT1G74740 918 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.007G112400 [exp] 61 / 6e-10 AT1G12680 492 / 4e-172 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.016G117200 [exp] 60 / 8e-10 AT3G51850 982 / 0.0 calcium-dependent protein kinase 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007963 [exp] 608 / 0 AT5G08160 597 / 0.0 serine/threonine protein kinase 3 (.1.2) Lus10013493 [exp] 604 / 0 AT5G08160 592 / 0.0 serine/threonine protein kinase 3 (.1.2) Lus10034642 [exp] 481 / 2e-171 AT5G08160 499 / 4e-179 serine/threonine protein kinase 3 (.1.2) Lus10035273 [exp] 248 / 4e-81 AT5G08160 238 / 7e-78 serine/threonine protein kinase 3 (.1.2) Lus10003916 [exp] 116 / 2e-28 AT2G32850 661 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037472 [exp] 115 / 3e-28 AT2G32850 660 / 0.0 Protein kinase superfamily protein (.1.2) Lus10005487 [exp] 63 / 7e-11 AT4G32830 545 / 0.0 ataurora1 (.1) Lus10033108 [exp] 61 / 3e-10 AT5G12480 598 / 0.0 calmodulin-domain protein kinase 7 (.1.2) Lus10029240 [exp] 61 / 3e-10 AT4G18710 708 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) Lus10033125 [exp] 62 / 4e-10 AT3G08720 515 / 1e-179 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.015G055200.1 pacid=42774981 polypeptide=Potri.015G055200.1.p locus=Potri.015G055200 ID=Potri.015G055200.1.v4.1 annot-version=v4.1 ATGGGGTGCTCTTTTTCGGGGCTGAATGCATTATACGACGCCGTTAACGGAGGGGGAGATGTGTGGATCAATGAGAACAGATTCAGGATCGTGAGGCAGC TTGGTGAAGGTGGATTTGCCTATGTGTTTTTGGTCAAGGAGGTGGTCAACGCCTCCGCTCCTGCTTCTGGTGGTGGTGCTGTTGCTGGTGGCCTCTCTAA AAAAGTCAAGGACAAATCCCATCTCTCTGGTGATGGAACTTATGCTATGAAGAAAGTTCTTATTCAGAATAATGAGCAGTTGGAGTTGGTGCGGGAAGAG ATTCATGTTTCTTCACTATTCAATCACCCCAATCTGCTTCCGCTTCTTGATCATGCTATTATTGCAGTCAAGGCTACTCAAGAAGGATCTTGGAACCATG AAGCCTATTTGTTATTTCCGGTTCACTTGGATGGAACCTTACTGGACAACTCCACTGCTATGAAAGCTAAAAAGGAATTCTTTTCTACCACAGATGTTCT TCAAATATTTCGACAGCTTTGTGCAGGGCTGAAACATATGCACAATTTTGACCCTTCATATGCACACAATGATGTCAAACCTGGTAATGTTCTCCTAACA CATAGGCAAGGGAAATCACCTCTTGCTATATTGATGGATTTTGGGAGTGCTCGACCTGCAAAAAGGCAAATTCGATCTCGCTCAGAGGCACTACAGTTGC AGGAATGGGCGTCTGAGCATTGTTCAGCACCTTTCAGAGCTCCTGAGTTGTGGGATTGCCCCAGCCATGCAGACATTGATGAGAGAACTGATATTTGGTC ACTAGGATGCACACTATATGCAATAATGTATGGAGTATCTCCATTTGAATACGCACTTGGAGAGTCTGGAGGAAGCCTTCAATTGGCCATTGTAAATGCA CAGATAAAGTGGCCAGCTGGACCCAAACCTCCATACCCAGAAGCTCTTCATCAGTTTGTGACATGGATGCTTCAACCTCAGGCAGCAGTTCGTCCTCGCA TTGATGATATCATAATTCATGTTGACAAGCTGATCTCAAAGTTTTCAAATTGA
AA sequence Show only first row Show all	>Potri.015G055200.1 pacid=42774981 polypeptide=Potri.015G055200.1.p locus=Potri.015G055200 ID=Potri.015G055200.1.v4.1 annot-version=v4.1 MGCSFSGLNALYDAVNGGGDVWINENRFRIVRQLGEGGFAYVFLVKEVVNASAPASGGGAVAGGLSKKVKDKSHLSGDGTYAMKKVLIQNNEQLELVREE IHVSSLFNHPNLLPLLDHAIIAVKATQEGSWNHEAYLLFPVHLDGTLLDNSTAMKAKKEFFSTTDVLQIFRQLCAGLKHMHNFDPSYAHNDVKPGNVLLT HRQGKSPLAILMDFGSARPAKRQIRSRSEALQLQEWASEHCSAPFRAPELWDCPSHADIDERTDIWSLGCTLYAIMYGVSPFEYALGESGGSLQLAIVNA QIKWPAGPKPPYPEALHQFVTWMLQPQAAVRPRIDDIIIHVDKLISKFSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08160		ATPK3	serine/threonine protein kinas...		Potri.015G055200 [exp]	0	1
AT1G11890		ATSEC22, SEC22	SECRETION 22, Synaptobrevin fa...		Potri.001G165600 [exp]	1.73	0.9305	Pt-SEC22.1
AT4G25600			Oxoglutarate/iron-dependent ox...		Potri.012G142800 [exp]	2.00	0.9197
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.001G361300 [exp]	5.19	0.8913
AT1G35780			unknown protein		Potri.005G165500 [exp]	5.29	0.9060
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Potri.012G142400 [exp]	5.47	0.8899
AT2G24765		ARF3, ARL1, ATA...	ARF-LIKE 1, ADP-ribosylation f...		Potri.018G096077 [exp]	7.34	0.8983
AT5G25760		PEX4, UBC21	ubiquitin-conjugating enzyme 2...		Potri.018G039200 [exp]	7.48	0.8960
AT2G01930	BBR_BPC	BPC1, BBR/BPC1,...	basic pentacysteine1 (.1.2)		Potri.008G140200 [exp]	7.54	0.8506
AT1G15020		QSO2, ATQSOX1	quiescin-sulfhydryl oxidase 1 ...		Potri.008G127300 [exp]	9.79	0.8803
AT4G20410		GAMMA-SNAP, GSN...	gamma-soluble NSF attachment p...		Potri.001G440600 [exp]	10.48	0.8893	Pt-GSNAP.2

Compare expression of checked genes

Potri.015G055200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.