Plant FIBer expression Database

Potri.015G055300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G08170 593 / 0 ATAIH, EMB1873 EMBRYO DEFECTIVE 1873, AGMATINE IMINOHYDROLASE, porphyromonas-type peptidyl-arginine deiminase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028216
[exp]
634 / 0 AT5G08170 584 / 0.0 EMBRYO DEFECTIVE 1873, AGMATINE IMINOHYDROLASE, porphyromonas-type peptidyl-arginine deiminase family protein (.1)
Lus10042920
[exp]
630 / 0 AT5G08170 582 / 0.0 EMBRYO DEFECTIVE 1873, AGMATINE IMINOHYDROLASE, porphyromonas-type peptidyl-arginine deiminase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0197 GME PF04371 PAD_porph Porphyromonas-type peptidyl-arginine deiminase
Representative CDS sequence
>Potri.015G055300.1 pacid=42776350 polypeptide=Potri.015G055300.1.p locus=Potri.015G055300 ID=Potri.015G055300.1.v4.1 annot-version=v4.1
ATGCAACAGAGGGAGATGGTAGTGACAGGAGAGGCACCGGCTGTTCATGGATACAGCATGCCTGCAGAGTGGGAGCCCCACTCACAGACTTGGATGGGCT
GGCCTGAGCGCCCGGATAACTGGCGAGACAATGCATTACATGCACAACTTGTTTTCACCAAAGTGGCAATTGCAATTTCAAAGTTTGAGCCTGTAACTGT
CTGTGCAAGCTCTGCTCAGTGGGAAAATGCACGAAGTCAGCTACCAGAACATGTGAGAGTTCTTGAGATGAGCATGAATGATTCTTGGTTTCGTGATATT
GGTCCGACTTTTGTTGTAAGGAAAAATGGATCAAATCATGGTAACCTCGAGCAACGCATTGCAGGGATTGATTGGAATTTTAATGGTTGGGGAGGGGTTG
ATGATGGTTGTTACCAGGATTGGAGTCTTGACCTTCTCGTGGCAAGGAAGATCATAGGAACGGAAAAACTTCCAAGGTTTCCCCACTTTATGATTCTTGA
AGGTGGAAGCATCCATGTAGATGGAGATGGGACATGCCTTACCACTGAGGAGTGCCTCTTGAACAAAAACAGGAACCCAAATTTGACCAAAGAACAGATA
GAAGATCAACTCAAGGCATATCTTGGAGTTCAGAAGGTTATTTGGTTGCCTTATGGATTATATGGTGATGATGATACTAATGGTCATATTGACAATATGT
GCTGCTTTGTGAGGCCTGGTGTTGTTTTGTTGTCTTGGACTGAAGATGAAAAGGATCCCCAGTTCAAACGATCAATGGAAGCTTTATCAATCCTCTCCAA
TACTAGTGATGCTAATGGTAGGAGATTAGAAATAATTAAACTTCATGTGCCAGGACCACTTTATATGACAGATGAAGAAGCTGCTGGAGTTGTTCAAGAT
GGCAATGCTAAACCAAGACTTCCAGGTACCAGACTTGCTGCATCTTATGTAAACTTCTATATTGCCAATGGTGGGATCATCACTCCACAGTTTGGGGACC
AGAAGTGGGATGATGAAGCTGTTCGTGTCCTCTCTCAAGCTTTTCCAAATCATGAAGTGGTGAGAATCGAAGGTGCGAGGGAAATTGTGTTGGCTGGGGG
GAATATACATTGCATTACTCAGCAACAGCCAGCTGCTCTCTCTACCTCGAACTGTTAA
AA sequence
>Potri.015G055300.1 pacid=42776350 polypeptide=Potri.015G055300.1.p locus=Potri.015G055300 ID=Potri.015G055300.1.v4.1 annot-version=v4.1
MQQREMVVTGEAPAVHGYSMPAEWEPHSQTWMGWPERPDNWRDNALHAQLVFTKVAIAISKFEPVTVCASSAQWENARSQLPEHVRVLEMSMNDSWFRDI
GPTFVVRKNGSNHGNLEQRIAGIDWNFNGWGGVDDGCYQDWSLDLLVARKIIGTEKLPRFPHFMILEGGSIHVDGDGTCLTTEECLLNKNRNPNLTKEQI
EDQLKAYLGVQKVIWLPYGLYGDDDTNGHIDNMCCFVRPGVVLLSWTEDEKDPQFKRSMEALSILSNTSDANGRRLEIIKLHVPGPLYMTDEEAAGVVQD
GNAKPRLPGTRLAASYVNFYIANGGIITPQFGDQKWDDEAVRVLSQAFPNHEVVRIEGAREIVLAGGNIHCITQQQPAALSTSNC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G08170 ATAIH, EMB1873 EMBRYO DEFECTIVE 1873, AGMATIN... Potri.015G055300
[exp]
0 1
AT1G02780 EMB2386 embryo defective 2386, Ribosom... Potri.004G078000
[exp]
1.73 0.8723 Pt-RPL19.3
AT1G69390 ARC12, ATMINE1 accumulation and replication o... Potri.010G162600
[exp]
2.00 0.8644
AT3G05700 Drought-responsive family prot... Potri.013G011200
[exp]
2.00 0.8947
AT5G63690 Nucleic acid-binding, OB-fold-... Potri.014G083500
[exp]
3.31 0.8210
AT5G60340 P-loop containing nucleoside t... Potri.012G109400
[exp]
5.65 0.8296
AT2G39805 Integral membrane Yip1 family ... Potri.008G060300
[exp]
6.70 0.8509
AT3G07720 Galactose oxidase/kelch repeat... Potri.014G168300
[exp]
7.14 0.8081
AT3G52220 unknown protein Potri.008G019100
[exp]
7.74 0.8504
AT3G59800 unknown protein Potri.017G010100
[exp]
7.93 0.8282
AT1G69330 RING/U-box superfamily protein... Potri.010G161100
[exp]
10.19 0.7695

Potri.015G055300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.