Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73980 953 / 0 Phosphoribulokinase / Uridine kinase family (.1) AT1G26190 933 / 0 Phosphoribulokinase / Uridine kinase family (.1) AT2G01460 209 / 2e-57 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G40870 86 / 2e-17 UKL1, ATUK/UPRT1 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) AT3G27190 82 / 3e-16 UKL2 uridine kinase-like 2 (.1) AT3G27440 80 / 2e-15 UKL5 uridine kinase-like 5 (.1) AT1G55810 79 / 3e-15 UKL3 uridine kinase-like 3 (.1.2.3) AT4G26510 78 / 5e-15 UKL4 uridine kinase-like 4 (.1.2) AT1G32060 64 / 2e-10 PRK phosphoribulokinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G134400 [exp] 954 / 0 AT1G26190 968 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.008G110500 [exp] 929 / 0 AT1G26190 933 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.008G130200 [exp] 214 / 6e-59 AT2G01460 1337 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.010G111900 [exp] 211 / 6e-58 AT2G01460 1325 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G069600 [exp] 87 / 5e-18 AT5G40870 852 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.001G332100 [exp] 87 / 6e-18 AT5G40870 820 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.017G071200 [exp] 83 / 1e-16 AT3G27440 707 / 0.0 uridine kinase-like 5 (.1) Potri.001G467800 [exp] 78 / 6e-15 AT1G55810 809 / 0.0 uridine kinase-like 3 (.1.2.3) Potri.011G165100 [exp] 76 / 4e-14 AT4G26510 818 / 0.0 uridine kinase-like 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009040 [exp] 1044 / 0 AT1G73980 971 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10009678 [exp] 1033 / 0 AT1G73980 962 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10030570 [exp] 939 / 0 AT1G26190 1018 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10030919 [exp] 918 / 0 AT1G26190 1007 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10025598 [exp] 219 / 1e-60 AT2G01460 1419 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10027063 [exp] 214 / 7e-59 AT2G01460 1457 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10041569 [exp] 91 / 4e-19 AT5G40870 853 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10035216 [exp] 89 / 2e-18 AT5G40870 850 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10021310 [exp] 76 / 2e-14 AT4G26510 753 / 0.0 uridine kinase-like 4 (.1.2) Lus10016989 [exp] 76 / 4e-14 AT4G26510 761 / 0.0 uridine kinase-like 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00485 [poplar] [flax] PRK Phosphoribulokinase / Uridine kinase family CL0273 [poplar] [flax] CYTH PF01928 [poplar] [flax] CYTH CYTH domain
Representative CDS sequence Show only first row Show all	>Potri.015G055400.3 pacid=42776577 polypeptide=Potri.015G055400.3.p locus=Potri.015G055400 ID=Potri.015G055400.3.v4.1 annot-version=v4.1 ATGGCTCAAGATACTGCTTCTCCGGGTGTTGATTCACCTAGGCGGCGTTCCGGTCTCTTGAGAGATCAGGTCCAAGCGGTTAAAAAGGACTCTGATCGCT ATGAGATTGTTCCAATTGGAGAAACATTGTCGTTTGAGAAAGGTTTCTTTATAGTAATCCGTGCATGCCAGTTGCTGGCCCAAAAGAATGATGGATTGAT ATTAGTTGGAGTAGCAGGTCCTTCTGGCGCCGGAAAGACTGTATTCACTGAGAAGGTGCTCAACTTTATGCCCAGTATTGCTGTCATAACCATGGATAAC TACAATGATTCAAGTCGAATCATTGATGGAAACTTTGATGACCCACGGTTGACGGATTATAATACACTTCTCGATAATATACATGGTTTAAAAGCAGGGA AACCTGTTCAGGTTCCCATATACGACTTCAAGACTAGCTCTCGCATAGGTTACAGGACTGTGGAAGTCCCTAGCTCCCGCATTGTGATTATTGAAGGCAT CTATGCCTTAAGCGAAAGACTGCGACCTTTGTTAGATCTTCGTGTGTCTGTCACTGGTGGTGTTCATTTTGACCTTGTCAAAAGGGTTTTGCGAGATATT CAACGCGCTGGCCAAGAGCCTGAAGAAATAATTCATCAAATCTCAGAAACGGTTTATCCCATGTATAAGGCTTTTATTGAGCCAGATCTCCAAACTGCAC ACATTAAAATCATCAACAAGTTTAATCCTTTCTCGGGGTTTCAGAACCCAACTTACATTTTAAAGTCAACAAGGTCAGTGACAGTTGAACAGATTAAGAC CATTCTTTCTGAAGAATACAAGGAAACAAAGGAGGAAACTTATGACATATATCTTCTACCACCTGGTGAAGATCCTGAAGCATGTCAATCGTATCTAAGA ATGAGAAACAGGGATGGAAAATACAATCTCATGTTTGAGGAATGGGTTACAGATAGTCCATTTATAATCTCACCTAGGATAACCTTTGAGGTTAGCGTAC GTCTTCTTGGAGGGTTGATGGCATTGGGGTACACAATTGCAACCATCCTGAAAAGAAGCAGTCATATCTTCTGTGATGATAGGGTTTCCATCAAAACTGA CTGGCTAGAACAACTTAATCGCCATTATGTTCAGGTGCAAGGTAAAGAGCGTTTGTACGTTAAATATGTTGCGGAGCAGCTAGGCTTGGATGGCTCATAT GTTCCTCGCACATACATAGAACAGATTCAGCTAGAGAAGCTTGTGAATGATGTCATGGCATTGCCAGATGATTTGAAGACAAAGCTCAGCATCGACGATG ATTTGGTTTCAAGCCCTAAAGAAGCCCTTTCCAGAGCTTCTGCAGACAGGAGAAATAAGTATCTGGGCCGCAGTTTGTCACTCACATATTCAAATCAACG GGAGAAGAATCTGTCCAAGCTGACAAGACTTGCTGTTAATAATAGAAGATTTGATGGAAGAACTGTAGAGTCACCTGCTGCAGTTGCCAACCAGGGTGTC ATTACTCAACTCTCTGAGCAAATTTCCACACTGAATGAGAGGATGGATGAGTTTACATCTCGCATCGAGGAGCTCAATTCCAAGTTTTCCACCAGAAAAG TTTCAGCTAGCCAACAAAATTTGGCTTTGCAGGGCGAACCCTGCAATGGATCTGGACCAACTTCTCTATTTGTTACTGGCTTGGGAAATGGCTCGCTAAC TGGATCGATACTGCCAAATTCTTCATCTTCTTCCCAGTTAAGTAGGGAGTCTCCACTAATGGAAGAGGTTCTTCTAATTGCACGGGGACAGCGTCAAATA ATGCACCAATTAGATAATCTAACCAATCTTCTGCATGAACACCGGGGAGAGAGGTCTCGTGCAGATACTATAAACAGTACAGTCGACATTGATTCCATCG CCTTTCCGCTTATTTTAACTTTAGCAATTGGGGGCTTAGGTGTGCTTCTGTTCAGCAGTATGACCTCCAGAAAATGA
AA sequence Show only first row Show all	>Potri.015G055400.3 pacid=42776577 polypeptide=Potri.015G055400.3.p locus=Potri.015G055400 ID=Potri.015G055400.3.v4.1 annot-version=v4.1 MAQDTASPGVDSPRRRSGLLRDQVQAVKKDSDRYEIVPIGETLSFEKGFFIVIRACQLLAQKNDGLILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN YNDSSRIIDGNFDDPRLTDYNTLLDNIHGLKAGKPVQVPIYDFKTSSRIGYRTVEVPSSRIVIIEGIYALSERLRPLLDLRVSVTGGVHFDLVKRVLRDI QRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFSGFQNPTYILKSTRSVTVEQIKTILSEEYKETKEETYDIYLLPPGEDPEACQSYLR MRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFCDDRVSIKTDWLEQLNRHYVQVQGKERLYVKYVAEQLGLDGSY VPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDDLVSSPKEALSRASADRRNKYLGRSLSLTYSNQREKNLSKLTRLAVNNRRFDGRTVESPAAVANQGV ITQLSEQISTLNERMDEFTSRIEELNSKFSTRKVSASQQNLALQGEPCNGSGPTSLFVTGLGNGSLTGSILPNSSSSSQLSRESPLMEEVLLIARGQRQI MHQLDNLTNLLHEHRGERSRADTINSTVDIDSIAFPLILTLAIGGLGVLLFSSMTSRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73980			Phosphoribulokinase / Uridine ...		Potri.015G055400 [exp]	0	1
AT2G39190		ATATH8	Protein kinase superfamily pro...		Potri.010G221000 [exp]	2.23	0.8867
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Potri.003G222800 [exp]	3.74	0.8787
AT3G54500			unknown protein		Potri.003G200600 [exp]	4.24	0.8420
AT5G20030			Plant Tudor-like RNA-binding p...		Potri.005G216200 [exp]	4.24	0.8485
AT4G13550			triglyceride lipases;triglycer...		Potri.010G062700 [exp]	5.29	0.8214
AT1G69870		NRT1.7	nitrate transporter 1.7 (.1)		Potri.010G034700 [exp]	5.29	0.8566
AT1G78600	CO	BBX22, DBB3, ST...	SALT TOLERANCE HOMOLOG 3, DOUB...		Potri.011G105400 [exp]	7.93	0.8426
AT2G46340		SPA1	SUPPRESSOR OF PHYA-105 1, SPA ...		Potri.014G095300 [exp]	15.19	0.8708	SPA1.1
AT2G46420			Plant protein 1589 of unknown ...		Potri.014G097800 [exp]	16.37	0.7566
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Potri.012G021400 [exp]	19.89	0.8238

Compare expression of checked genes

Potri.015G055400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.