Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35520 206 / 2e-66 MIS12, ATMIS12 MIS12 HOMOLOGUE, ARABIDOPSIS MINICHROMOSOME INSTABILITY 12 \(MIS12\)-LIKE, minichromosome instability 12 (mis12)-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009652 [exp] 239 / 2e-79 AT5G35520 172 / 2e-53 MIS12 HOMOLOGUE, ARABIDOPSIS MINICHROMOSOME INSTABILITY 12 \(MIS12\)-LIKE, minichromosome instability 12 (mis12)-like (.1) Lus10009016 [exp] 217 / 7e-71 AT5G35520 160 / 1e-48 MIS12 HOMOLOGUE, ARABIDOPSIS MINICHROMOSOME INSTABILITY 12 \(MIS12\)-LIKE, minichromosome instability 12 (mis12)-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05859 [poplar] [flax] Mis12 Mis12 protein
Representative CDS sequence Show only first row Show all	>Potri.015G055500.5 pacid=42775188 polypeptide=Potri.015G055500.5.p locus=Potri.015G055500 ID=Potri.015G055500.5.v4.1 annot-version=v4.1 ATGGAAGGCAGTGAAAGCGAGGCAGTGTTCGAATCCCTAAATCTGAACCCCCAACTTTTCATCAACGAAACCCTAAACACCGTCGACGATTTGCTGGACG ACGCTTTCCATTTCTTCCACCAGGAAGCATCAACCCTTTTGAAAACTGACGGCACTAGTAGATCCCAATTTATAAGCGAGGGAATTGCTTACGTCCGCGA TATGATACAATCGGACTTGGATACGCGGTTGGGTATGTGGGAGAAGTACTGTCTTCACCATGTTTTTGCGGTTCCTGCGGGTTTCTCTTTACCTCAAACT GAATCACCAGCTGAAACTTTCACGTGTCAAGATTTGCTTTCTGATCCTGATCTGGATGCACAGTTGGATATCTTGAGGAACAGGCTTACTATGGTAGGAA AGGAGTCTTCTGAGCTGAATCATGAGCTCCAAGCCTTGGAAAGGCAATCCGCTTCAAGTGATCATTGTGCAGAACTTGTCAGTGAGGCCCTGCTATTATA TGACCAAGCCTCCACGCAAGACATGTATCAAGATATGCTGTCAACCATGTCCGAACTTCATGAAAAAATGGAGAAGCTGAGGACCAGAAAGGTGGAAAAC TTAGAATGCATTAGAGCAAAGAGGATTAACGATCCGAACAGAGATTTATTGGCATCAAATTACAGGAAGGGTCTCCCAAATGCAACAGTGGAGGATATTC AAGAATTTATGGCTGATTTAAAGCATATGTGA
AA sequence Show only first row Show all	>Potri.015G055500.5 pacid=42775188 polypeptide=Potri.015G055500.5.p locus=Potri.015G055500 ID=Potri.015G055500.5.v4.1 annot-version=v4.1 MEGSESEAVFESLNLNPQLFINETLNTVDDLLDDAFHFFHQEASTLLKTDGTSRSQFISEGIAYVRDMIQSDLDTRLGMWEKYCLHHVFAVPAGFSLPQT ESPAETFTCQDLLSDPDLDAQLDILRNRLTMVGKESSELNHELQALERQSASSDHCAELVSEALLLYDQASTQDMYQDMLSTMSELHEKMEKLRTRKVEN LECIRAKRINDPNRDLLASNYRKGLPNATVEDIQEFMADLKHM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35520		MIS12, ATMIS12	MIS12 HOMOLOGUE, ARABIDOPSIS M...		Potri.015G055500 [exp]	0	1
AT5G01350			unknown protein		Potri.016G118800 [exp]	4.89	0.7082
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Potri.006G197000 [exp]	6.08	0.7161
AT1G26470			unknown protein		Potri.010G159200 [exp]	6.48	0.6100
AT4G12230			alpha/beta-Hydrolases superfam...		Potri.003G114900 [exp]	9.94	0.5405
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Potri.014G103900 [exp]	11.13	0.6644	GIF2.2
AT5G16110			unknown protein		Potri.017G114700 [exp]	16.49	0.6528
AT5G50870		UBC27	ubiquitin-conjugating enzyme 2...		Potri.012G104100 [exp]	18.33	0.6331
AT1G07350		SR45a	serine/arginine rich-like prot...		Potri.001G248100 [exp]	22.11	0.6713
AT2G23780			RING/U-box superfamily protein...		Potri.005G127900 [exp]	24.61	0.6562
AT2G38130		ATMAK3	Acyl-CoA N-acyltransferases (N...		Potri.001G429200 [exp]	26.87	0.6113

Compare expression of checked genes

Potri.015G055500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.