Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23050 1054 / 0 AAE17 acyl-activating enzyme 17 (.1) AT1G55320 682 / 0 AAE18 acyl-activating enzyme 18 (.1.2) AT5G36880 128 / 1e-30 ACS acetyl-CoA synthetase (.1.2) AT1G65060 59 / 7e-09 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT3G21240 56 / 6e-08 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT4G05160 52 / 2e-06 AMP-dependent synthetase and ligase family protein (.1) AT1G51680 50 / 4e-06 AT4CL1, 4CL.1, 4CL1 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) AT3G16910 49 / 2e-05 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) AT1G62940 45 / 0.0002 ACOS5 acyl-CoA synthetase 5 (.1) AT2G47240 45 / 0.0002 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G006700 [exp] 689 / 0 AT1G55320 1078 / 0.0 acyl-activating enzyme 18 (.1.2) Potri.001G006600 [exp] 673 / 0 AT1G55320 1041 / 0.0 acyl-activating enzyme 18 (.1.2) Potri.014G140900 [exp] 144 / 9e-36 AT5G36880 1191 / 0.0 acetyl-CoA synthetase (.1.2) Potri.015G144700 [exp] 56 / 5e-08 AT3G48990 776 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G033600 [exp] 53 / 5e-07 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.001G055700 [exp] 53 / 8e-07 AT1G62940 786 / 0.0 acyl-CoA synthetase 5 (.1) Potri.017G112800 [exp] 52 / 1e-06 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 50 / 7e-06 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.006G169700 [exp] 46 / 9e-05 AT3G21240 802 / 0.0 4-coumarate:CoA ligase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027257 [exp] 1147 / 0 AT5G23050 1044 / 0.0 acyl-activating enzyme 17 (.1) Lus10038966 [exp] 1142 / 0 AT5G23050 1043 / 0.0 acyl-activating enzyme 17 (.1) Lus10012931 [exp] 709 / 0 AT1G55320 1008 / 0.0 acyl-activating enzyme 18 (.1.2) Lus10034997 [exp] 694 / 0 AT1G55320 1003 / 0.0 acyl-activating enzyme 18 (.1.2) Lus10012595 [exp] 145 / 5e-36 AT5G36880 1246 / 0.0 acetyl-CoA synthetase (.1.2) Lus10041499 [exp] 145 / 7e-36 AT5G36880 1241 / 0.0 acetyl-CoA synthetase (.1.2) Lus10013831 [exp] 64 / 2e-10 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10025842 [exp] 59 / 8e-09 AT1G62940 793 / 0.0 acyl-CoA synthetase 5 (.1) Lus10016135 [exp] 59 / 1e-08 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10021431 [exp] 57 / 5e-08 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.015G056000.1 pacid=42775232 polypeptide=Potri.015G056000.1.p locus=Potri.015G056000 ID=Potri.015G056000.1.v4.1 annot-version=v4.1 ATGGCTTCTCTACACTACAAAGCTTTAGACTCCATCTCTGTATCAGACATCGAAGCTCTTGGGATTTCCTCATCAATCGCACTCAAACTTTACGAAGATA TCTCTGAAATCATCAACACTCATGGTCCTTCCTCTCCTCAAACATGGACTCTTCTCTCCAAACGCCTACTTCATCCTCTTCTTCCTTTCTCCTTCCATCA GATGATGTATTATGGCTGCTTCAAGGACTTTGGCCCCGACCCGCCCGCCTGGTCACCCGACCCGGAGGCTGCAATGCTGACGAATGTGGGACAGTTGTTA GAGAGGCGTGGAAAAGAGTTTTTGGGTTCTGCATATAAGGATCCCATATCAAGTTTCTCGAACTTTCAAGAATTTTCAGTATCCAATCCTGAGGTGTATT GGAAAACTATACTCGATGAAATGAGTATATCATTTTCAGTTCCTCCCCAATGTATTTTAAGCGAGAATACATCTAGAGAAAGTTCCTTGGCAAACCCAGG TGGTCAATGGCTTCCTGGAGCATATGTAAATCCTGCAAAAACTTGTTTGACTTTGAATTGTAAGAGAAATTTGGATGATGTTGTTATAAGATGGCGTGAT GAAGGAAATGATGATATGCCTGTAAGCAGTTTGACACTCGAGGAATTGCGTTCAGAGGTTTGGTTAGTTGCATATGCACTCAATGCTCTGGGTTTGGACA GAGGATCTGCAATTGCAATTGATATGCCAATGAATGTGGAGTCTGTGATTATCTACCTTGCTATTGTTCTGGCAGGACATGTAGTTGTATCCATTGCTGA TAGCTTTGCTCCACTTGAAATATCAACAAGGCTTAAAATTTCAGAAGCGAAAGCCATATTTACTCAGGATCTTATAATTCGTGGTGATAAAAGTATTCCA TTGTACAGTCGAGTTGTGCATGCTCAAGCACCTATGGCAATTGTCCTTCCTACCAAAGGCTGTAGCTTCAGCATGAACTTGCGTGACGGTGACATTTCCT GGCATGATTTCCTTGAAAAAGCAACAGATTTAAGAGGAGATGAATTTGCAGCCGTTGAACAACCAGTTGAAGCATTTACAAATATCCTTTTCTCATCTGG AACTACAGGGGAGCCAAAAGCAATTCCGTGGACCCATTTGACTCCTTTCAAAGCTGCTGCTGATGCATGGTGCCACATGGATATCCGCAAGGGTGATATT GTTGCTTGGCCAACTAACCTTGGGTGGATGATGGGTCCTTGGCTAGTATATGCTTCATTATTAAATGGGGCATCCATTGCTTTATATAATGGATCCCCTC TTGGTTCTGGCTTTGCCAAATTTGTACAGGATGCTAGTGTAACGATGCTTGGTGTGATCCCAAGTATAGTCCGGATATGGAAAAGTGCAAACTCCACATC AGGCTATGATTGGTCTGCCATTCGTTGCTTTGCCTCCACTGGTGAAGCATCAAGTGTAGATGAATACCTATGGTTGATGGGACGAGCTCAGTACAAACCT ATTATTGAATATTGCGGTGGCACAGAGATTGGTGGCGGATTTGTTTCCGGGTCCTTGTTGCAGCCTCAATCACTGGCTGCTTTTAGCACGCCAGCAATGG GATGCAGTTTGTTTATTCTTGGTGACGATGGTCATCCTATACCACAAAATGTACCAGGGATGGGTGAACTGGCACTTGGTCCTCTCATGTTTGGAGCTTC AAGCACACTGCTGAATGCTGACCATTACAATGTGTACTTTAAAGGAATGCCCCTTTGGAATGGAAAAATTCTTCGAAGGCATGGGGATGTTTTTGAGCGT ACTTCTAGAGGTTATTATCATGCACATGGCCGCGCAGATGATACAATGAATCTTGGGGGTATCAAGGTTAGCTCTGTTGAGATTGAACGAGTCTGTAATG CTGTTGATAGCAATGTCCTGGAGACAGCTGCCGTTGGGGTGCCTCCACCTCAAGGCGGGCCTGAGCAATTGGTAATTGCTGTTGTATTCAAGGATTCAGA TGAGTCTACTGTTGACTTGGATAAGTTGAGGATTTCTTACAATTCAGCAGTGCAAAAGAAACTAAATCCTCTGTTCAGGATTTCTCATGTTGTGCCCTTT TCTTCTCTTCCAAGGACTGCTACAAACAAGGTCATGAGAAGGGTTTTGCGGCAGCAACTTTCTCAGCAGGACCAAAACTCTAAACTGTAA
AA sequence Show only first row Show all	>Potri.015G056000.1 pacid=42775232 polypeptide=Potri.015G056000.1.p locus=Potri.015G056000 ID=Potri.015G056000.1.v4.1 annot-version=v4.1 MASLHYKALDSISVSDIEALGISSSIALKLYEDISEIINTHGPSSPQTWTLLSKRLLHPLLPFSFHQMMYYGCFKDFGPDPPAWSPDPEAAMLTNVGQLL ERRGKEFLGSAYKDPISSFSNFQEFSVSNPEVYWKTILDEMSISFSVPPQCILSENTSRESSLANPGGQWLPGAYVNPAKTCLTLNCKRNLDDVVIRWRD EGNDDMPVSSLTLEELRSEVWLVAYALNALGLDRGSAIAIDMPMNVESVIIYLAIVLAGHVVVSIADSFAPLEISTRLKISEAKAIFTQDLIIRGDKSIP LYSRVVHAQAPMAIVLPTKGCSFSMNLRDGDISWHDFLEKATDLRGDEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTHLTPFKAAADAWCHMDIRKGDI VAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDASVTMLGVIPSIVRIWKSANSTSGYDWSAIRCFASTGEASSVDEYLWLMGRAQYKP IIEYCGGTEIGGGFVSGSLLQPQSLAAFSTPAMGCSLFILGDDGHPIPQNVPGMGELALGPLMFGASSTLLNADHYNVYFKGMPLWNGKILRRHGDVFER TSRGYYHAHGRADDTMNLGGIKVSSVEIERVCNAVDSNVLETAAVGVPPPQGGPEQLVIAVVFKDSDESTVDLDKLRISYNSAVQKKLNPLFRISHVVPF SSLPRTATNKVMRRVLRQQLSQQDQNSKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23050		AAE17	acyl-activating enzyme 17 (.1)		Potri.015G056000 [exp]	0	1
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Potri.008G060600 [exp]	2.44	0.8407
AT3G26100			Regulator of chromosome conden...		Potri.015G009400 [exp]	15.00	0.7483
AT4G22570		APT3	adenine phosphoribosyl transfe...		Potri.001G121400 [exp]	20.49	0.8208	MTN30.1
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Potri.009G085100 [exp]	29.59	0.8400
AT3G15220			Protein kinase superfamily pro...		Potri.011G116300 [exp]	32.12	0.8370
AT3G61750			Cytochrome b561/ferric reducta...		Potri.014G098700 [exp]	33.61	0.8381
AT1G77140		ATVPS45, VPS45	vacuolar protein sorting 45 (....		Potri.002G071600 [exp]	44.89	0.8262	Pt-VPS45.2
AT2G03480		QUL2	QUASIMODO2 LIKE 2 (.1.2)		Potri.008G094800 [exp]	46.13	0.8356
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Potri.002G011800 [exp]	49.92	0.8344
AT1G71790			Subunits of heterodimeric acti...		Potri.005G199600 [exp]	60.29	0.8250

Compare expression of checked genes

Potri.015G056000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.