Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07980 253 / 7e-68 dentin sialophosphoprotein-related (.1) AT5G07940 234 / 3e-62 unknown protein AT5G07970 214 / 2e-56 dentin sialophosphoprotein-related (.1) AT3G29385 100 / 1e-23 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G066600 [exp] 1940 / 0 AT5G07980 277 / 2e-75 dentin sialophosphoprotein-related (.1) Potri.015G056400 [exp] 1037 / 0 AT5G07980 355 / 5e-100 dentin sialophosphoprotein-related (.1) Potri.012G061400 [exp] 976 / 0 AT5G07980 362 / 3e-102 dentin sialophosphoprotein-related (.1) Potri.009G025001 [exp] 49 / 2e-06 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040532 [exp] 544 / 1e-170 AT5G07980 290 / 5e-80 dentin sialophosphoprotein-related (.1) Lus10021162 [exp] 543 / 6e-167 AT5G07940 270 / 4e-73 unknown protein Lus10021621 [exp] 260 / 2e-70 AT5G07940 265 / 4e-72 unknown protein Lus10034693 [exp] 202 / 5e-53 AT5G07940 126 / 3e-29 unknown protein Lus10034692 [exp] 43 / 0.0003 AT5G07980 66 / 2e-13 dentin sialophosphoprotein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G056200.4 pacid=42775094 polypeptide=Potri.015G056200.4.p locus=Potri.015G056200 ID=Potri.015G056200.4.v4.1 annot-version=v4.1 ATGGACTTTAATGAGTCTCCAGTGAATTATGATTTTTTCGGAGGTCTGCAGCAAATTAGTAGCCAGCATCCTGGCATGCTGCAATCTTTGCCGAGACAGC AGTCTGGGATTAGTGACATGCAGCTATTACAGCAACAGTTTATGCTTAAGCAAATGCAAGAAATGCAGAGGCAGCAACAACTTCAGAAGCAACAAGAAGC AAGGAAGCTGAATTCAATGAATCAAGTTGCGGCTTTTGCAAAACAGGCAGCTGCCAATCCCTCACAGGCTTTGATCAATGGCAATCCTATTCATGAAACA TCTAATTATTCATGGCAGCCTGAGCACATGGAAGCTAACACAAGCTGGCCGCAGCCAGGTGCTTCGCCAGTTATCCAAGGATCCTTTAGAGGACACGTGT TTTCCCCTCAGCAGAACGAGGGAACACCAAGCTTGATGGGTATGGTACCTCAGCCAGTTGATCAATCTCTTTATGGTGTCCCTGTCCCTGGAACAAGAGT CACTCCAAGCCAGTATCCTCCTGTCCAAATGGATAAGCCGTCAATGCAGCAGATATCAAGCAGCAGTGATTCCTTAACAAGCAATCAGTATACTGGATTT CCAAAGCAGGTTAGTGTGCAGGATGGACCTTTGGTTTCTAGACTGGGATATCAGGGGAAAAATATGATTGCTTCTTCTGATGGTCAGGGTATAAATACTG GATTTAATTTGGAAAACTTGCAGCTAGTGAATCCCCAGCAAAGCAATGGGCCACAGCAAGAAATTTGCACTAAGCAAGACCTGGGTGGTCTATCAGAAAC ATCACAAGAGGAAACAGCGATACAGGTTGCTCCTTCCCAGGATGTGGCTACCCTAGATCCAACTGAGGCAAAGATTTTGTTTGGTTCAGATGATAATTTG TGGGATGCCTTTGGCAGGGGTACCAACCGGGGTTCTGGAGGTTGCAATATGTTGGATGATACAGACTTCTTCTGTTCATTGCCTTCTGTGCAAAGTGGGA GTTGGAGTGCTCTTATGCAATCTGCTGTAGCAGAAACTTCTAGTGGCGATACAGGGCTTCAAGAAGAGTGGAGTGGTCTGACTTTTATAAATAGTGAACC TCAAGCTGATAATCAGCAGACTCCCTCTGTGAATGCTAGTAGCAAACATCAGTCAAATTGGGATGGTAATAGCTTGCAGTCTGTATCTTCCTTGAACTCT CAACCCTTGCCTTTGTCTCATGATGCCAATACAGGTATGAATTATCATAATATCCCAGGGGCGGCTCAGCAATCTGGAGTCAACACTTCACATGAACGCA TGGAGAGGTTGCAGTCTGTTTCTCCTCATAGACATATTCAGCAGTTTCCGGAAGATGGAACCAAGTGGTCTGATACGAGCCTCATGCAAAAAGCAGCTGT TGAAGGCAGTCATTTTTATGGAAAAGCTACTCATTCTACTGATGCAGGATCAAATGCTAAAAGCATTCCAGGTTCTTGGGCAAATCAACAGGGCATGCAA TCATATAGCTCCAACGGTCAACCATTAAATAGTCCATGTGGCTGGAACTTTATGGGTTCCGTGTCTCCTAGAACTATCGTTGCTTTCAAAAACCAGGGAA ATGAAAACACATTCCAAGATTCTCATAATGTTGATAAAAAAGGTCCTATGTTTGAGGTGATGGGTGACAGTGCTGGTATATGGAAGACTAATTCAATTGC TGAATTGGAACATGCAAGATCTGCAATTGGAAACCCACAGGTCAATCCTCTAGTTCCTCCATCCCAGCAATTGCTAATTCCAGAACATGCCTTTTCTTCC CACGGCCCTTCACTAGCAACTGATTCTCTCAATTCAACTCAAGTCATTTCAAATACAGGGGAGAAGGGACGTGCATTGTTGGCTCCTACATCCTCTGTTC AGTCTTTACCTCCTTCACGTGATACATCTCATGGACATTTGAGGAATACTACTCCTGGCACCTTGGTACATGCTGGCAATAGTGCCCAAGGAAAGTTTTC TACTGCCTTTCCCCCTGGTTTTCCTTATTCGAAAAGTCATCTTCCAAATCAGCACATGCCTGATACAGGAGGACGAGCAACTGCCTGTGAATCTGTTAAT GAATCTTTTGATAGATTTTCTTCTCAACCAAAACATACAGAAGAGTCTTTTGAGAGAGGTCAATTGAATCAATCAGCGGGGCCATTGGTTCCTGACACAT CCAGGCATACTTCACATAATGATTTTGCCTCTTCTACTGAGATGCCCCAGCCAAGTGATGACCAAAACCATGCAAGAGATTCTGCTCAACAATTCCCAGT GCTGGAAGCTTCGCCAGCCCCTCAGCGTTATGCTTCATCACAAGATGGTTTTTCTTCAAAAATGCCACCTACTTTGTGGACCAGTGTTCCAACTCAGCTA CATCCATTTGGCACTCAGTCGTTTCAGACTGGACCCAATATGTTTAAACCCAATATTGAATCACATAACAGTTCAGGGATAACTTCCTCTCAACCACAGA AGCTAGATGACCAAATTATGCAAAATGGAGGGAGCAGTCGAGCTGAATCTGGTGAATGTTCTATGAAGTCACATGGTTTTGTTGGGAAAGAGCAACCAGC AAAAGGAGACCACTTGCAGCAAGTTCTACCTGAGAATGATCGAGCCCAGAAGACAATGAGTGATTCACATGAGAAAGAATCTGTTGTGAATCATCTTACT GAAACACCTGCTTCAAACCTAACCAGTACTCAGAAACAAATTGAAGCTTTTGGCCGATCTTTGAAACCCAATAATATTTTGTTTCAAAATTACTCCCTGC TGCATCAAATGCAGGGAATGAAAAATGCGGAGGTTGAACATGTTAATAGAAGTTTGAAAAGATTTAAAAGTCTTGATGGTTCTGTGGATGCTGATTTGGT AGCTGCTCAGGGAGGTCAGCAGTTTTATAGACACAATAATATGGTCAGAGATGCTCCAGCAAATCACACTTCAACCCCCCCTGGACATTCCAAGATGCTA AGCTTTTCAGCAAAAACAGCAGATAATCAGGACATAAATGCACTTTCTAATGATATGCTTGCATTTGGTCAGAATGATTTTCAGCATTTCACCAATAGCA ATACTGCGGTTTCTGTCAGAGATGAGCATTCTCAAATGAGTAACCAGATGGCTTCATCCTGGCTTGATCATTATGAAACCTTTAAAAATGGACAGATATT ACAAATGAATAATGCACGAAAAGCTGTCACTATGAAGCCTTCAGAACTGCCCTCCACATCTGAAAGACCTTATGAAAGATCACATGCTCATAATTTACTT GAGCAAGGAAATGCTGTTGCTGCTAGTCAATTTGGTATTATTCAAAAAAGTTCAACTGAGAATTTCTCCACCCCTCAGTCATTGCAGCCTGATTCTGCTG ATGTGAGTTTGGTGGTTATGAGACCGAAGAAGCGTAAAAGTGCCATATCCAAGCTTGTACCGTGGCATAAGGAAGTGACACTGGGTCCTCAAAGACTTCA GAATCTCAGTGCAGCAGAACTGGTCTGGGCTCTGGCAGCAAATAGATTGACTGAGAAGGTAGAAGATGACGATGAAATGGTAGATGATGGACTGCCGGTC CATAGATCAAAGAGAAGGCTTATATTGACTACACAGCTTATGCAGATACTTCTCCATCCTCCTCTGGCATCAATTCTTTCTGCAGATGCTATTTTACATT ATGAGAGTGCTGCATTCTTTGTTTCCAGATCAACACTAGGAGATGCATGCAGCACACTCTCTTGTACTGGAAGTGATACTCCTGTGCCTTCTAACAGTGG AGACCTCCTGCCCGAGAAGATAAAAACATCGGAGAAGAATAGGGATCAGTACTTCTCAAAGGCCACAGAAGACCTTATCAGTAGGACGAGGAAGCTGGAG AATGATTTGTTGAGATTGGACAAAAGAACATCAGTTTCAGACCTGAGAGTGGAATGCCAAGATCTAGAGAGGTTTTCTGTTATCAATCGCTTTGCTAAGT TCCATGGCCGGGGTCAAACTGATGGGGCTGAGAGCTCATCCTCCTCAGATGCATCTGCAAATGCTCACAAATCTTGTCTGCAGAGATATGTTACTGCACT ACCCATGCCTAGGTTTCTTCCTGACAGGGTACAATGTCTTTCACTTTGA
AA sequence Show only first row Show all	>Potri.015G056200.4 pacid=42775094 polypeptide=Potri.015G056200.4.p locus=Potri.015G056200 ID=Potri.015G056200.4.v4.1 annot-version=v4.1 MDFNESPVNYDFFGGLQQISSQHPGMLQSLPRQQSGISDMQLLQQQFMLKQMQEMQRQQQLQKQQEARKLNSMNQVAAFAKQAAANPSQALINGNPIHET SNYSWQPEHMEANTSWPQPGASPVIQGSFRGHVFSPQQNEGTPSLMGMVPQPVDQSLYGVPVPGTRVTPSQYPPVQMDKPSMQQISSSSDSLTSNQYTGF PKQVSVQDGPLVSRLGYQGKNMIASSDGQGINTGFNLENLQLVNPQQSNGPQQEICTKQDLGGLSETSQEETAIQVAPSQDVATLDPTEAKILFGSDDNL WDAFGRGTNRGSGGCNMLDDTDFFCSLPSVQSGSWSALMQSAVAETSSGDTGLQEEWSGLTFINSEPQADNQQTPSVNASSKHQSNWDGNSLQSVSSLNS QPLPLSHDANTGMNYHNIPGAAQQSGVNTSHERMERLQSVSPHRHIQQFPEDGTKWSDTSLMQKAAVEGSHFYGKATHSTDAGSNAKSIPGSWANQQGMQ SYSSNGQPLNSPCGWNFMGSVSPRTIVAFKNQGNENTFQDSHNVDKKGPMFEVMGDSAGIWKTNSIAELEHARSAIGNPQVNPLVPPSQQLLIPEHAFSS HGPSLATDSLNSTQVISNTGEKGRALLAPTSSVQSLPPSRDTSHGHLRNTTPGTLVHAGNSAQGKFSTAFPPGFPYSKSHLPNQHMPDTGGRATACESVN ESFDRFSSQPKHTEESFERGQLNQSAGPLVPDTSRHTSHNDFASSTEMPQPSDDQNHARDSAQQFPVLEASPAPQRYASSQDGFSSKMPPTLWTSVPTQL HPFGTQSFQTGPNMFKPNIESHNSSGITSSQPQKLDDQIMQNGGSSRAESGECSMKSHGFVGKEQPAKGDHLQQVLPENDRAQKTMSDSHEKESVVNHLT ETPASNLTSTQKQIEAFGRSLKPNNILFQNYSLLHQMQGMKNAEVEHVNRSLKRFKSLDGSVDADLVAAQGGQQFYRHNNMVRDAPANHTSTPPGHSKML SFSAKTADNQDINALSNDMLAFGQNDFQHFTNSNTAVSVRDEHSQMSNQMASSWLDHYETFKNGQILQMNNARKAVTMKPSELPSTSERPYERSHAHNLL EQGNAVAASQFGIIQKSSTENFSTPQSLQPDSADVSLVVMRPKKRKSAISKLVPWHKEVTLGPQRLQNLSAAELVWALAANRLTEKVEDDDEMVDDGLPV HRSKRRLILTTQLMQILLHPPLASILSADAILHYESAAFFVSRSTLGDACSTLSCTGSDTPVPSNSGDLLPEKIKTSEKNRDQYFSKATEDLISRTRKLE NDLLRLDKRTSVSDLRVECQDLERFSVINRFAKFHGRGQTDGAESSSSSDASANAHKSCLQRYVTALPMPRFLPDRVQCLSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07980			dentin sialophosphoprotein-rel...		Potri.015G056200 [exp]	0	1
					Potri.013G071800 [exp]	1.41	0.9048
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Potri.006G075500 [exp]	4.47	0.8675
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060900 [exp]	6.48	0.8888
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Potri.006G205800 [exp]	6.92	0.8431
AT5G07980			dentin sialophosphoprotein-rel...		Potri.012G066600 [exp]	7.21	0.8424
AT2G47310			flowering time control protein...		Potri.002G192900 [exp]	8.94	0.8410	FCA.3
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.001G123400 [exp]	9.32	0.8761
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Potri.013G041201 [exp]	9.89	0.8422
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.010G056900 [exp]	10.24	0.8663
AT4G17610			tRNA/rRNA methyltransferase (S...		Potri.001G150900 [exp]	12.64	0.8360

Compare expression of checked genes

Potri.015G056200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.