Plant FIBer expression Database

Potri.015G056400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G07980 356 / 4e-100 dentin sialophosphoprotein-related (.1)
AT5G07940 298 / 2e-81 unknown protein
AT5G07970 282 / 6e-78 dentin sialophosphoprotein-related (.1)
AT3G29385 117 / 3e-29 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G061400
[exp]
2614 / 0 AT5G07980 362 / 3e-102 dentin sialophosphoprotein-related (.1)
Potri.015G056200
[exp]
1039 / 0 AT5G07980 252 / 8e-68 dentin sialophosphoprotein-related (.1)
Potri.012G066600
[exp]
1022 / 0 AT5G07980 277 / 2e-75 dentin sialophosphoprotein-related (.1)
Potri.009G025001
[exp]
44 / 0.0001 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021162
[exp]
979 / 0 AT5G07940 270 / 4e-73 unknown protein
Lus10040532
[exp]
563 / 4e-174 AT5G07980 290 / 5e-80 dentin sialophosphoprotein-related (.1)
Lus10021621
[exp]
407 / 2e-118 AT5G07940 265 / 4e-72 unknown protein
Lus10034693
[exp]
250 / 5e-68 AT5G07940 126 / 3e-29 unknown protein
Lus10040531
[exp]
134 / 9e-36 AT5G07980 109 / 4e-28 dentin sialophosphoprotein-related (.1)
Lus10034692
[exp]
67 / 2e-12 AT5G07980 66 / 2e-13 dentin sialophosphoprotein-related (.1)
PFAM info
Representative CDS sequence
>Potri.015G056400.3 pacid=42775338 polypeptide=Potri.015G056400.3.p locus=Potri.015G056400 ID=Potri.015G056400.3.v4.1 annot-version=v4.1
ATGCCTGGCAACGAAGTTGGAGATAGGATCCACAATTTCTTTGGGCAGGATAACTGGTCCCAGGGCCAGCACCAAGCACAGGCTGTTGATGGGACATGGA
ATGGCTTAAATAATAATCCCTGGGCTGGAAGTCACTGGCAGATTGGCACATCTCTTATTTCTAACTTAAAAAATGACAATGTACATCAACCAGGGCCTGA
GTTTGCTAGAAGCCAGCCTGAAAGCCAACAGCCACCTTTGAATGGCTATATGCATGGTCATCAAGTTCTCCAGTCAAGGCAGAATGAAGCAAACTTTGTG
GGAGTGGATATAGAATCTGATCGGCGTAATATGTCATCAAAAGGCTTTTCAATGCTTGATTCACAGCTAGGAAATGGTCCTGATTTTCTCAAGAAGAATT
CAGCCAGGATGGATTTTAATGAATCTCCAGTTAATTATGATTTTTTCAGAGCTCAGCAGCAAATCAGTGGCCAGCATTCTGGCATGCTGCAACCTTTTCC
TAGACAACAGCCAGGGATTAGTGACATGCAGCTACTACAGCAACAATTCATGCTCAAGCAAATGCAAGAAATGCAGAGGCAGCAGCAACTTCAGAAGCAA
CAAGATGCTAGGAAGCTGAATTCAGTGAATCAGGTTTCCGCTTTTGCAAAACAGGCAGCTGGCAATTCACAGGCTTTGATCAATGGAATTCCTATTCATG
AAACATCGAATTTTTCATGGCAGCCTGAGCTTATGGCAGCTAGCTCACACTGGCCGCAGCGAGGTGCACCTCCAGTTATGCAAGGATCCTTTAGAGGACA
TATGTTTTCCCCTGAACAGGGCCAGGCAACCGCATGCTTAATGGGTATGGTTCCACAGCATGCGGATCAATCTCTTTATGGTGTCCCTATCTCTGGAACA
AGAGTCAGTTCAAGTCAGTATTCTCCTGTCCAAATGGATAAGCCTTCAATGCAGCAGATATCAGGCAGCAGCAGCTCCTTACCAAGCAATCAGTATACTG
GATTTCCAGAGCAGGTTAATGTCCAAGATGGAACTTTGGTTTCTAGACAGGGATATAAGGGAAAAAATATGATCACTTCTTCTGATGGTCATGGTATAGA
TAGTGGATTTAATTTGGAAAAATTGCAGCAGCAAGTGAATCCCCAGCAAAGCAATGGGCTAGTGCAAGAAACTTGCTCGAGGCAAGACCTGGCTGGTCCA
TCAGAAACATCACAAGAGGAAACAGCCGTACAGGTTGCTCCTTCCCAGAACAAGGCTACCCTAGATCCAACTGAAGCTATGATTTTATTTGGGTCAGATG
ATAATTTATTGGATAGCTTTGGCAGGGGTGCCAGCATGGGTTCCGGAGGTTACAATATGCTGGATGGAACAGACTTTTTCAGTACATTGCCCTCTGTTCA
AAGTGGGAGCTGGAGTGCCCTTATGCAATCTGCTGTAGCAGAAACTTCTAGTGGTGATACCGGGCAAAAAGAAGAGTGGAGTGGTCTGACTTGCCGAAAA
AATGAACCTCCAGCTGGGAATCAGCAGGCTCCCACTGTAAATGATAGTAGCAAACAGCAGTCAAATTGGGCTGATAATAGCTTGCAATCAGCCTCTAGCT
TAAACTCTCGACCCTTCCCTGTGTCTCATAAAACCAATACAGGTATGAGTTATAATAATATACCAGCGGCTCATCAATCTGGAGTCAATACTTCACATGA
ACACAGTGAGAGGTTGCAGACTGGTTCTCCTCATAGACATATTCAACAGTTTCCAGGGGATGGAACCAAGCGTTCAGATAGGAGCCTCCTACAAAAAGCA
GCCGCTGAAGGCAGTCATTTTTATGGAAAAGCTACCCATTCTTCAGACGCAGAATTAAATGCAAAGAGCATTCAAGGCCCTTGGGCCAATCAGCAGAGCA
TGCCATCTTATAATTCCAGTGGCCAACCATTACGTAGTCCAAGTGGCTGGAACTTCATGGATTCTGCATCTTCCATCACAACTGCTGCTTTGAAAAATCA
GGGAAACGAAAAATCATGCCAAGATTCTCAGAATGCTGATAAAAAAAGTCCCTTGTTTGAGGTGATGAGTCATGGTTCTGATAAATGGAAGGCTACTTCT
GTTTCTAATTCAATTACTGAATTGGAATGTGCAAAATCTTCCATGAGAAGCCCATTGGTCAACAAAGAAGATACTAACCGGAATAATGTTGCTGCATTGC
TAGATTCAAGCACTGAGAGGGCTGATACAGAAAGCAGTCAACAGCTTCCAAAAAGTAACAATATTGATATCTGGAAACATGCTGGTTTGTCAGTGAACCA
TAAAGGAACTGAAATTCCTGGAAAGTACCAACCTCATATGGTTAAGAATGATCAACCCTTTGAGTCATCAGGAAATAGTAGTTTAGCAAATGGGGCAGTT
GAAACTCTCAAAATGCAGAGCTCAAATACAGATGAAAACACAACCGATAGCTTCCCCAGTACAACCCACCAGGCTTCCACTTTTGGTGCGAGGGAAAATG
CATGGTTAGGTGCAAATGATTCTTTTTCTTTGTCTGGAGGAAAACAAAAGTCATCCAGTAATATAGGTCGAAAGCCATCTGGAATTCGTAAATTTCAGTA
TCACCCCATGGGGGATCTGGATATTGACATGGAACCTTCATATGGAACAAAACATGTTGCAAATTCACAGTTCACGCATCAGCAGTTTTCTCAAAGGTTA
AATGGTCTTGACCAAGAGTATACTGGGCAGCCAAACTTTCCTAGTCATGTAGCTAGAGATTCTGATGAAATTGAGAAGGGTCATTTATGTGGCTTTCAAG
GAGAAACAAAAGGCTTAGATGAGATTCCTCCAAAAAGCATTCTTCCAGATTCTGCACCTGGCTTGTCTACTCCCTTTGACAGATTTGTTTGCTCACCAAA
TAAAACCATTTCAAGCAGTCAAAATATGCTGGAGCTTCTTCACAAGGTGGACCAATCAAGGGAACAGCGAAATGAAATGCACTTTAGTTCTCTCGACTGC
AACCAGTCTACTGAGATGCCTGAAACTGAAACTCTTGATGCATCTTTTCACATTCAGAAGAATCAATCTTCTGCTTCTCAAGCTTTTGGTTTACAACTTG
CGCCTCCATCCCAACAGTTGCTCATTCCAGAGCACGCCCTTCCTTCTCAGAACCCCTCAAATGCGATGAATTCTACATGGTTGGCACCTACACCCTCTTT
TCAGTCTTTAACTCCACATGAAACTTCTCATGGACATTTGAGGAATGCTATTTGCAGCACCTCGACACATGCTGGCAGTAGTGCTCAAAGAAAGTTTCCT
GCTGTCTTTTCCCCTGGTTTCCCTTACTCAAGAAGTCATCTTTCCACTCAGCACAGGACTGATACAGGTGGACAAGCAACAACCAGTGAATCTGTTAATG
AATCTTTTGATCGATTTTCTTCTCAACCAAAACAGACGGAGGAGTCCTCTGAGAGAGGTCAAACTAATCAATCTGCAATACCATTGGTGCTTGACACATC
GAGGCATACTTCAAATAATGATAATCCCTCTTCTTCTGAGATGTCCCAGCCGAGTAGCAACAACCAAAACCATGCAAGAGATTCTGCTCAACAATTCCCG
GTGCTGGAAGCTGCACCAGCTCCGGCTCCTCAGCGCAATGCTTTATCACAAGACGCCGTTTCTTCAAAAACATCACCTACTATGTGGACCAGTGTTCCAA
CTCAGCTACGTCCATTTGGCTCTCAGCCGTTTCAGGCTCTGTCCAATATGTTTAAACCCAATCTTCAATCACATAACAGTTCAGGCACATCTTTCTCTCA
ACCACAGAAGCCAGAAGATCAAATTATGCAAACTGGAGGGAGCAGTCAAGCCGAACCTGGTGTCTGTTCGATGAATTCACATGGTTTTGTTGAGAAAGAA
CAACTGCCAAAAGGAGACCACTTGCGGCAAGCTTCACCTGAGAATGATCGGGCCCAGAAGACAGTGAGTGCTTCACATGATAAAGACTCTACTGTGAATC
ATCTTACTGAAACATCTCTTTCAAACCTGGCCAGTACTCGGAAACAAATTGAAGCTTTTGGCCGATCTTTAAAACCCAACAATACTTTGCATCAAAATTA
CTCCCTACTGCATCAAATGCAGGGCATGGAAAATGTGGGGCTCAATCATGGTAATAGAAGTTTGAATAGATTTAAAAGTCCTGATGGTTATGTGGATCCT
CAGCTGGTAGCTACTCAGGGAGATCAGCAGTTTTATGGACTCAATAATATGGTCAGAGATGCATCAGCAAATCACACTTCAATACCTCCTGGAGATTCCA
AAATGCTAAGCTTTTCAGGAAAAACAGCTGATACTAATGACACGAATTCACCCTCAAAGGAAGTGCTTGCATTTAGTCGGAATGATTCTCAGAGTTCCGC
TAATAGCAACAGTGAAGTTTCTGTCAGAGGTGAACATTCCCAGATTAGTCCCCAGATGGCTCCATCCTGGTTTGATCAGTATGGTACCTTTAAAAATGGA
CAGATATTACGAATGCATGATGCTCAAAGAACTGTCACTGTGAAAACTTCAGAACTGCCTTTCACCACTGGAAGACCTGATGATCCATTGCATGCTCATA
GTTTGATTGAGCAAGGAAATGCTGCTGCTGCTAGCCATTTTGGTATAGTCCAAAAGAGTTCAACCCGCCCATCAATAGCCTGTGAGAATTTTTCTTCCCC
TCAGTCATTGCAGCCTGATTCTGCTGATGTGAGTCTGGTGGTTATGAGACCAAAGAAACGTAAAAGTTCCATATCTGAGCTTCTAACATGGCATAAGGAA
GTGATGCATTGTCCTCAAAGGCTTCAGAATATCAGTGTAGCTGAAGTGGACTGGGCACAGGCAACAAATAGATTGACAGAGAAGGTTGAAGATGAAGTTG
AAATGGTAGACGATGGTCTGCCAGTTCTTAGATCAAAGAGGAGGCTTATATCGACCACACAGCTTATGCAGATGCTCCTTCGCCCTCCCATGGCATCAAT
TCTCTCTTCAGATGCTTTTTTGCATTATGAGAATGCTGCATACTCTGTTGCCAGATCAACACTTGGAGATGCATGCAGCTCACTCTCTTGTACTGGAAGG
GATACTCCAGCGCCTTCCAACAGTGGAGACCACCTGCCTGAGAAGATAAAATCATCTGAGAAGATTAGTGATCAGTACTTCTCAAAAGTCATGGAAGACC
TTATCACTAGAACAAGGAAGCTGGAGAGTGATTTGTTGAGATTGGATAAAAGAGCATCAGTTTCAGACCTGAGAGTGGAATGCCAAGATCTAGAGAGGTT
TTCTGTTATCAATCGTTTTGCGAAGTTCCACGGCCGGGTTCAAGGTGAAGGGGCCGAGAGCTCATCATCCTCGGATGCATCTGTAAATGCCCAGAAATCC
TGTCTTCAGAGATATGCCACTGCTCTACCCATGCCTAGGAATCTTCCTGACAGGGTACAATGTCTTTCACTATGA
AA sequence
>Potri.015G056400.3 pacid=42775338 polypeptide=Potri.015G056400.3.p locus=Potri.015G056400 ID=Potri.015G056400.3.v4.1 annot-version=v4.1
MPGNEVGDRIHNFFGQDNWSQGQHQAQAVDGTWNGLNNNPWAGSHWQIGTSLISNLKNDNVHQPGPEFARSQPESQQPPLNGYMHGHQVLQSRQNEANFV
GVDIESDRRNMSSKGFSMLDSQLGNGPDFLKKNSARMDFNESPVNYDFFRAQQQISGQHSGMLQPFPRQQPGISDMQLLQQQFMLKQMQEMQRQQQLQKQ
QDARKLNSVNQVSAFAKQAAGNSQALINGIPIHETSNFSWQPELMAASSHWPQRGAPPVMQGSFRGHMFSPEQGQATACLMGMVPQHADQSLYGVPISGT
RVSSSQYSPVQMDKPSMQQISGSSSSLPSNQYTGFPEQVNVQDGTLVSRQGYKGKNMITSSDGHGIDSGFNLEKLQQQVNPQQSNGLVQETCSRQDLAGP
SETSQEETAVQVAPSQNKATLDPTEAMILFGSDDNLLDSFGRGASMGSGGYNMLDGTDFFSTLPSVQSGSWSALMQSAVAETSSGDTGQKEEWSGLTCRK
NEPPAGNQQAPTVNDSSKQQSNWADNSLQSASSLNSRPFPVSHKTNTGMSYNNIPAAHQSGVNTSHEHSERLQTGSPHRHIQQFPGDGTKRSDRSLLQKA
AAEGSHFYGKATHSSDAELNAKSIQGPWANQQSMPSYNSSGQPLRSPSGWNFMDSASSITTAALKNQGNEKSCQDSQNADKKSPLFEVMSHGSDKWKATS
VSNSITELECAKSSMRSPLVNKEDTNRNNVAALLDSSTERADTESSQQLPKSNNIDIWKHAGLSVNHKGTEIPGKYQPHMVKNDQPFESSGNSSLANGAV
ETLKMQSSNTDENTTDSFPSTTHQASTFGARENAWLGANDSFSLSGGKQKSSSNIGRKPSGIRKFQYHPMGDLDIDMEPSYGTKHVANSQFTHQQFSQRL
NGLDQEYTGQPNFPSHVARDSDEIEKGHLCGFQGETKGLDEIPPKSILPDSAPGLSTPFDRFVCSPNKTISSSQNMLELLHKVDQSREQRNEMHFSSLDC
NQSTEMPETETLDASFHIQKNQSSASQAFGLQLAPPSQQLLIPEHALPSQNPSNAMNSTWLAPTPSFQSLTPHETSHGHLRNAICSTSTHAGSSAQRKFP
AVFSPGFPYSRSHLSTQHRTDTGGQATTSESVNESFDRFSSQPKQTEESSERGQTNQSAIPLVLDTSRHTSNNDNPSSSEMSQPSSNNQNHARDSAQQFP
VLEAAPAPAPQRNALSQDAVSSKTSPTMWTSVPTQLRPFGSQPFQALSNMFKPNLQSHNSSGTSFSQPQKPEDQIMQTGGSSQAEPGVCSMNSHGFVEKE
QLPKGDHLRQASPENDRAQKTVSASHDKDSTVNHLTETSLSNLASTRKQIEAFGRSLKPNNTLHQNYSLLHQMQGMENVGLNHGNRSLNRFKSPDGYVDP
QLVATQGDQQFYGLNNMVRDASANHTSIPPGDSKMLSFSGKTADTNDTNSPSKEVLAFSRNDSQSSANSNSEVSVRGEHSQISPQMAPSWFDQYGTFKNG
QILRMHDAQRTVTVKTSELPFTTGRPDDPLHAHSLIEQGNAAAASHFGIVQKSSTRPSIACENFSSPQSLQPDSADVSLVVMRPKKRKSSISELLTWHKE
VMHCPQRLQNISVAEVDWAQATNRLTEKVEDEVEMVDDGLPVLRSKRRLISTTQLMQMLLRPPMASILSSDAFLHYENAAYSVARSTLGDACSSLSCTGR
DTPAPSNSGDHLPEKIKSSEKISDQYFSKVMEDLITRTRKLESDLLRLDKRASVSDLRVECQDLERFSVINRFAKFHGRVQGEGAESSSSSDASVNAQKS
CLQRYATALPMPRNLPDRVQCLSL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G07980 dentin sialophosphoprotein-rel... Potri.015G056400
[exp]
0 1
AT4G39420 unknown protein Potri.005G086100
[exp]
2.00 0.9082
AT1G08060 MOM1, MOM MORPHEUS MOLECULE 1, MORPHEUS ... Potri.013G006000
[exp]
2.44 0.9031 MOM.2,1
AT4G00450 CCT, CRP CRYPTIC PRECOCIOUS, CENTER CIT... Potri.002G159900
[exp]
2.44 0.9120 Pt-CRP.3
AT3G01460 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.... Potri.017G072460
[exp]
5.29 0.8635
AT5G44800 PKR1, CHR4, MI-... PICKLE RELATED 1, chromatin re... Potri.001G123400
[exp]
6.92 0.8973
AT4G24680 MOS1 modifier of snc1 (.1) Potri.012G088500
[exp]
10.58 0.8494
AT5G17910 unknown protein Potri.019G044500
[exp]
11.66 0.8582
AT3G62900 CW-type Zinc Finger (.1) Potri.002G209409
[exp]
12.00 0.8568
AT1G05910 cell division cycle protein 48... Potri.017G030900
[exp]
13.41 0.8475 BRD911
AT4G20020 unknown protein Potri.004G218800
[exp]
14.49 0.8578

Potri.015G056400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.