Plant FIBer expression Database

Potri.015G057100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G20170 745 / 0 RNA polymerase II transcription mediators (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019427
[exp]
911 / 0 AT5G20170 716 / 0.0 RNA polymerase II transcription mediators (.1)
Lus10043284
[exp]
907 / 0 AT5G20170 721 / 0.0 RNA polymerase II transcription mediators (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10156 Med17 Subunit 17 of Mediator complex
Representative CDS sequence
>Potri.015G057100.6 pacid=42775830 polypeptide=Potri.015G057100.6.p locus=Potri.015G057100 ID=Potri.015G057100.6.v4.1 annot-version=v4.1
ATGGATGGAAAGTTGGAAATGTCCCTCGATAAGCTACCTGTCAAGCGCTTGGAATCCATCGAAGAAAATGGCTTCGAACGTTTTCCTACTGATATTGGAT
ATGATGAGAAGCAAGTGGCGCTAATTCGACGAATAGATTTTGCTTGGGCGGTGGAGAAAGAAGACAAGGAGAAGAAACAGAAGAAAAAGCAGAAGAAGAG
CTCCAGAGAGAGCTCATCTACAACAACACCATGGCCTTGGCAAAACATGGTGGAGAACTTGCACTTAGCTCATCAAGAACTCTCTGTCATTATTGATCTT
ATCAATACGGTTGAAGCTAATGATGCTGTAACAGTAGCTGGGATGACCAGGCCAAAGCCATTACCCAATGAGATTCTGGCTGACCTTGCTGTATCAACAG
CAACCAAGCTACAGTGCTACCGGAATCTTGGTAAATATTTTAAGCAGTCCGCCAAAGCTTTGGAACAGCAAGTTGCCAGGGAAGCAAGATTTTATGGTGC
TTTAATCAGATTACAGCAGAACTGGAAAGTCAAACGGCAGCGCGTGGCAGCAATTGCTCCTGGAAATGAAGGCTTCATGATTGATCTTTTTGATAATTCA
TTATATGATTCAGTTGCAGTATTCCAGCCATCTTCTCTGTCCACAATTCGCATCGATCATGACTCAGACGGCATGCTAGCCATAAATTTACCTTCAAAAT
CCTGTCATTCTCTTGTTTTTGGTTTTCTCAGTGGGCATTCTAATGTTCCAAAGAAATCCAATAAGATTAAAACCCATGGCTCACTCAAGAATCCATCTAA
AAATCCTGAGAAAGAATCTTTAAGTGATAACGAATGTGTGAAGGATACACACTTACTGCTTCGTAAGGTTCATCGAACCATTTTTGATGAACAGGTGTTT
GATATGGTGAACCGTGGTGCAGTTAACCAATCATCTGGACTCAATGTTACTGGAATACAAGAAAATTATCTACAATTGTGCATAGGTCCTGGCATTTCTA
TATTTATATCCATTGTGCCATCTGATCAGGGTGATCAAGCAATTGATAGTGAAGGCCCGGAGAACTTAGAATCTGCAGTTGTACCTTTAGACTCGTTTGA
CGGAGTGAAGTTAGCTGAAGAAAAGCACAACAGTCTTACTAAAAAGCCTAGATTTCCTAACTGCATTACTTATGAAATATATCTCAAACAGATATTTCAT
GAGTATGTATTTGTAGAGGCAAAGGGTAGACCTTCTTTCACTGGTACTCGCATGCCTGGTCAACCAGCAAACGATGGATCTGGTCTTCTCAGTCATTTCT
GTTTGTCTCTCTCTCATAGAATAATTTCGAACAAAGTTCTTATGGAGTTGGAAAACGTGGTTTGCAGAGTGCCATATCTTCATTTGATATCTCACCCCAC
TTGGCATTCTCGGTCATCTGCATGGACAATCTTTATGAAGATTCCTCCATCCATTCTCCATGCAAGCTCTCAAACCCGGACGCCGGACATCCAAAACATG
AAGAATGTTGTTAAATCAGAGTTTTGGACGAAGGTTGTGGTACATGATGATTGCATTAACATTGAAGCAGAAGGAGCTCCTAATGTTGTCGGACTATTTA
AAGACAGTTCTGATGATAAATGTTCTACCAACAAATATGACTGCAACTTGGATGATCTTCCTGTGATAATCCTGCAGCAGGTTGCAAGCCAGGTTATTCG
CTGGCTTCATGAGGAAGCACTTGCAGTGGGAATAAAAGCAAACCGTGACTTTTTGTGTTTGTCCTTTGAGTTGGAGCAGGGTGAAATTCTTAACCTCGTG
GCACACGTGGACCCAGAAGATACTCAAGGATGCATCTCCTGGTGGTTGACAATGGAAGACGGTTTTGCAGAGGAGAAGAAACTTCATATGAACATTGCGG
ACGGTGCATCCGAATACAGGAAGTTCTTGGGATATTTACCGTTGGATGTGCTATACTCAACACTGATGGATTTAGTTAGTTTGTGTGGTGGTGGGAGCCA
TTGA
AA sequence
>Potri.015G057100.6 pacid=42775830 polypeptide=Potri.015G057100.6.p locus=Potri.015G057100 ID=Potri.015G057100.6.v4.1 annot-version=v4.1
MDGKLEMSLDKLPVKRLESIEENGFERFPTDIGYDEKQVALIRRIDFAWAVEKEDKEKKQKKKQKKSSRESSSTTTPWPWQNMVENLHLAHQELSVIIDL
INTVEANDAVTVAGMTRPKPLPNEILADLAVSTATKLQCYRNLGKYFKQSAKALEQQVAREARFYGALIRLQQNWKVKRQRVAAIAPGNEGFMIDLFDNS
LYDSVAVFQPSSLSTIRIDHDSDGMLAINLPSKSCHSLVFGFLSGHSNVPKKSNKIKTHGSLKNPSKNPEKESLSDNECVKDTHLLLRKVHRTIFDEQVF
DMVNRGAVNQSSGLNVTGIQENYLQLCIGPGISIFISIVPSDQGDQAIDSEGPENLESAVVPLDSFDGVKLAEEKHNSLTKKPRFPNCITYEIYLKQIFH
EYVFVEAKGRPSFTGTRMPGQPANDGSGLLSHFCLSLSHRIISNKVLMELENVVCRVPYLHLISHPTWHSRSSAWTIFMKIPPSILHASSQTRTPDIQNM
KNVVKSEFWTKVVVHDDCINIEAEGAPNVVGLFKDSSDDKCSTNKYDCNLDDLPVIILQQVASQVIRWLHEEALAVGIKANRDFLCLSFELEQGEILNLV
AHVDPEDTQGCISWWLTMEDGFAEEKKLHMNIADGASEYRKFLGYLPLDVLYSTLMDLVSLCGGGSH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G20170 RNA polymerase II transcriptio... Potri.015G057100
[exp]
0 1
AT4G38600 UPL3, KAK UBIQUITIN-PROTEIN LIGASE 3, KA... Potri.004G174700
[exp]
5.29 0.7887
AT3G46960 RNA helicase, ATP-dependent, S... Potri.009G041200
[exp]
9.16 0.7546
AT4G34370 ATARI1 ARABIDOPSIS ARIADNE 1, ARIADNE... Potri.009G111200
[exp]
9.48 0.7201
AT5G15020 SNL2 SIN3-like 2 (.1.2) Potri.001G350200
[exp]
12.64 0.7606
AT5G04360 ATPU1 ,ATLDA PULLULANASE 1, limit dextrinas... Potri.010G229300
[exp]
13.41 0.6610
AT3G09760 RING/U-box superfamily protein... Potri.006G129000
[exp]
15.87 0.7036
AT5G44090 Calcium-binding EF-hand family... Potri.005G227100
[exp]
19.59 0.7045
AT4G31810 ATP-dependent caseinolytic (Cl... Potri.006G264200
[exp]
19.59 0.7241
AT5G19840 2-oxoglutarate (2OG) and Fe(II... Potri.005G215200
[exp]
22.80 0.7078
AT3G05090 LRS1 LATERAL ROOT STIMULATOR 1, Tra... Potri.013G033800
[exp]
25.09 0.7070

Potri.015G057100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.