Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08020 875 / 0 ATRPA70B ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) AT5G61000 821 / 0 ATRPA70D Replication factor-A protein 1-related (.1) AT2G06510 319 / 2e-100 ATRPA70A, ATRPA1A ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) AT4G19130 293 / 5e-89 Replication factor-A protein 1-related (.1) AT5G45400 289 / 6e-87 ATRPA70C Replication factor-A protein 1-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G065300 [exp] 301 / 4e-93 AT2G06510 897 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Potri.003G102700 [exp] 290 / 3e-87 AT5G45400 892 / 0.0 Replication factor-A protein 1-related (.1) Potri.019G061550 [exp] 60 / 3e-09 AT1G52950 76 / 2e-14 Nucleic acid-binding, OB-fold-like protein (.1) Potri.001G165480 [exp] 45 / 9e-05 AT1G52950 52 / 3e-07 Nucleic acid-binding, OB-fold-like protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040517 [exp] 958 / 0 AT5G08020 885 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10021153 [exp] 956 / 0 AT5G08020 884 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10006548 [exp] 888 / 0 AT5G08020 845 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10003268 [exp] 325 / 1e-105 AT5G08020 282 / 2e-89 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10023805 [exp] 286 / 1e-85 AT5G45400 764 / 0.0 Replication factor-A protein 1-related (.1) Lus10003955 [exp] 282 / 2e-84 AT4G19130 715 / 0.0 Replication factor-A protein 1-related (.1) Lus10033436 [exp] 201 / 4e-57 AT2G06510 600 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Lus10034737 [exp] 188 / 4e-52 AT4G19130 517 / 2e-176 Replication factor-A protein 1-related (.1) Lus10033435 [exp] 154 / 5e-42 AT2G06510 426 / 4e-147 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Lus10033272 [exp] 115 / 2e-26 AT5G45400 363 / 2e-114 Replication factor-A protein 1-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF01336 [poplar] [flax] tRNA_anti-codon OB-fold nucleic acid binding domain CL0021 [poplar] [flax] OB PF04057 [poplar] [flax] Rep-A_N Replication factor-A protein 1, N-terminal domain CL0021 [poplar] [flax] OB PF08646 [poplar] [flax] Rep_fac-A_C Replication factor-A C terminal domain CL0021 [poplar] [flax] OB PF16900 [poplar] [flax] REPA_OB_2 Replication protein A OB domain
Representative CDS sequence Show only first row Show all	>Potri.015G057300.1 pacid=42775755 polypeptide=Potri.015G057300.1.p locus=Potri.015G057300 ID=Potri.015G057300.1.v4.1 annot-version=v4.1 ATGAATGCAGCGATAGAAAAATCAGTGAGCCCAGATGGAATATCAAAAATGCTTTCAATTCCTAAACCAGATTCATTTACTCATCTTCCTGAAATCATCC TTCAAGTCACGAATCTTGAGCCTAAAGGCAAATCTTATGGGTTTGATGCTAGTGATGGAAAGATGAAGATCAAAGCGATCTTCAGTTCACGTTTGTCATC TGAGATCCTCTCTGGGAATATTCAAAATCTTTGTCTCATCCGAGTTCTTGATTATACAGTCAATGAGATCCCCAGTAAATCTGAGAAGTTTTTGATCATA ACAAAGTGTGAGGTTGTTTCACCTGCGCTTGAGAAGGAGATCAAGGAAGTGGTCGAACAGGAAGAATCAGACATGGGTATGCCGTTGAAGAAGCCAAAGC TAGAAAATGAAGTAAAGAGTGAAAATATCAAGGAAGCGAAGGGGCTTATTTTGAAGCCAAAGCAAGAGATTGTTGCTAAATCTGCTGCTCAAATTGTACA CGAACAGCACGGAAATATGGCCCCGGCTGCGCGAATGGCCATGACACGGAGAGTTCACCCTCTTGTTTCATTAAATCCTTACCAAGGCAACTGGACCATA AAAGTCAGGGTTACAAGCAAAGGAAATATGCGTACCTATAGGAACGCGAGAGGAGAAGGGTGTGTTTTCAATGTGGAATTAACAGATGGAGATGGCACTC AAATACAAGCAACAATGTTCAATGAGGCTGCAAAGAAATTCTATGATAGGTTTGAGCTGGGGAAGGTTTACTACATATCGAAAGGGACGCTCAGGGTTGC TAACAAGCAGTTTAAGACAGTGCAAAATGATTATGAGATGACCTTGAATGAAAACTCTGAAGTGGAAGAGGCTAGCGATGAAGCAGCTTGTATTCCCGAA ACTAAATTCAAGTTTGTCCCAATTGATCAGTTGGGTCCCTATGTCAATTCAAAAGATCTTGTTGATGTTATTGGAATTGTTCAAAGTGTTTCACCGACAA CGAGTATCCGGAGGAAGAGCAACAATGAGACTGTTCCAAAGCGTGATATTGTTGTAGCTGATGAGACGAAGAAGACAGTTGTGGTGTCATTGTGGAATGA GCTTGCAACAAGTGTGGGACAGGAATTGCACGATATTGCTGATAAATCTCCTGTAGTTGCGATCAAATCCCTTAAAGTTGGAGATTTTCAAGGTATATCT TTGTCCACCCTGGGCAAGAGCATAGTGCAAGTCAACCCAGTTATTGCTGAATCAGAGAAGCTGAGAAACTGGTATGATTCTGAAGGTAAAGAGACTTCAA TGGCCTCTGTTGGCTCTGGTTTGAGCCCTTCGACCAAGAGTGGGGCAAGGTCCATGTACTCTGATCGAGTATCTCTATCTCATATAACAAGCAACCCATC CTTGGGGGAGGACAAGCCTGCATTTTTCAGCATTAGAGCATATATAAGCTTCATCAAACCTGACCAGACAATGTGGTATCGGGCTTGCAAGACATGCAAT AAGAAAGTGACTGATGCTCTGGGGGGTGGATATTGGTGTGAAGGATGCCAGAAGAATGATGCAGAGTGCAGCTTAAGGTACATTATGGTGGTAAAAGTTT CTGATGGGAGTGGTGAAGGTTGGGTTTCTGCATTCAATGAAGAAGCTGAAAAGATCATTGGTTGCTCTGCTGATGAACTTGACCTACTCAAATCACAGAT AGAAGAGAACACCTACCAACAAAGATTGAAAGAAGCCACTTGGAATCCTCATCTTTTGAGAATCAGTGTCTCCCAGAACGAGTACAATAACGAGAAGAGG CAAAGGATGACAGTTAGGGCTGTTGCTCCAGTTGATTTTGCTGCTGAGTCCAGATTTTTGCTTGAAGAGATTTCAAAGATGAAAGGTTCTCAATAG
AA sequence Show only first row Show all	>Potri.015G057300.1 pacid=42775755 polypeptide=Potri.015G057300.1.p locus=Potri.015G057300 ID=Potri.015G057300.1.v4.1 annot-version=v4.1 MNAAIEKSVSPDGISKMLSIPKPDSFTHLPEIILQVTNLEPKGKSYGFDASDGKMKIKAIFSSRLSSEILSGNIQNLCLIRVLDYTVNEIPSKSEKFLII TKCEVVSPALEKEIKEVVEQEESDMGMPLKKPKLENEVKSENIKEAKGLILKPKQEIVAKSAAQIVHEQHGNMAPAARMAMTRRVHPLVSLNPYQGNWTI KVRVTSKGNMRTYRNARGEGCVFNVELTDGDGTQIQATMFNEAAKKFYDRFELGKVYYISKGTLRVANKQFKTVQNDYEMTLNENSEVEEASDEAACIPE TKFKFVPIDQLGPYVNSKDLVDVIGIVQSVSPTTSIRRKSNNETVPKRDIVVADETKKTVVVSLWNELATSVGQELHDIADKSPVVAIKSLKVGDFQGIS LSTLGKSIVQVNPVIAESEKLRNWYDSEGKETSMASVGSGLSPSTKSGARSMYSDRVSLSHITSNPSLGEDKPAFFSIRAYISFIKPDQTMWYRACKTCN KKVTDALGGGYWCEGCQKNDAECSLRYIMVVKVSDGSGEGWVSAFNEEAEKIIGCSADELDLLKSQIEENTYQQRLKEATWNPHLLRISVSQNEYNNEKR QRMTVRAVAPVDFAAESRFLLEEISKMKGSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Potri.015G057300 [exp]	0	1
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Potri.014G021100 [exp]	1.73	0.9475	CYCA3.2
AT3G54560		HTA11	histone H2A 11 (.1)		Potri.002G046400 [exp]	3.46	0.9437
AT1G08880		HTA5 ,G-H2AX ,G...	histone H2A 5, gamma histone v...		Potri.013G028800 [exp]	3.46	0.9364
AT3G48160	E2F_DP	E2FE, E2L3, DEL...	E2F-LIKE 3, DP-E2F-like 1 (.1....		Potri.015G070300 [exp]	4.00	0.9275
AT5G43530			Helicase protein with RING/U-b...		Potri.003G083400 [exp]	5.29	0.9129
AT4G17240			unknown protein		Potri.016G008400 [exp]	5.47	0.9310
AT2G40550		ETG1	E2F target gene 1 (.1)		Potri.019G056200 [exp]	7.34	0.8709
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Potri.016G050300 [exp]	7.41	0.9323
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Potri.009G121500 [exp]	7.48	0.9357
AT5G22110		DPB2, CYL2, DBP...	CYCLOPS 2, DNA polymerase epsi...		Potri.012G039300 [exp]	7.87	0.8853

Compare expression of checked genes

Potri.015G057300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.