Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61030 158 / 5e-47 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT1G74230 132 / 2e-37 GR-RBP5 glycine-rich RNA-binding protein 5 (.1) AT3G23830 100 / 1e-26 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT4G13850 100 / 1e-26 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT4G24770 91 / 2e-21 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT2G37220 89 / 6e-21 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G47320 87 / 2e-20 RPS19 ribosomal protein S19 (.1) AT3G53460 86 / 3e-19 CP29 chloroplast RNA-binding protein 29 (.1.2.3.4) AT4G13860 79 / 5e-19 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G06210 79 / 2e-18 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G061600 [exp] 217 / 7e-71 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.017G059000 [exp] 116 / 5e-33 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.001G319900 [exp] 114 / 5e-32 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.001G319800 [exp] 107 / 3e-29 AT4G13850 137 / 2e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.012G090200 [exp] 90 / 6e-21 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.001G340800 [exp] 89 / 9e-21 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.006G208500 [exp] 84 / 2e-20 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G086500 [exp] 87 / 6e-20 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.014G157300 [exp] 80 / 5e-19 AT3G08000 129 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021154 [exp] 172 / 1e-52 AT5G61030 188 / 5e-58 glycine-rich RNA-binding protein 3 (.1) Lus10017852 [exp] 168 / 9e-52 AT5G61030 178 / 7e-55 glycine-rich RNA-binding protein 3 (.1) Lus10034685 [exp] 169 / 2e-51 AT5G61030 177 / 7e-54 glycine-rich RNA-binding protein 3 (.1) Lus10040519 [exp] 173 / 3e-49 AT5G61030 189 / 2e-53 glycine-rich RNA-binding protein 3 (.1) Lus10043158 [exp] 127 / 5e-37 AT4G13850 154 / 1e-48 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10032591 [exp] 124 / 7e-36 AT4G13850 157 / 5e-50 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10022551 [exp] 119 / 7e-34 AT4G13850 167 / 7e-54 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10016639 [exp] 114 / 5e-32 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10026514 [exp] 84 / 7e-19 AT2G37220 284 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10023569 [exp] 78 / 7e-18 AT2G21660 147 / 8e-46 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.015G057400.1 pacid=42775981 polypeptide=Potri.015G057400.1.p locus=Potri.015G057400 ID=Potri.015G057400.1.v4.1 annot-version=v4.1 ATGGCGTTTCTTACTAAATTGGGAAATATGTTACGGCAGACTGCTAATAGGCAGATCACTTCTGAGATCTCTGCATCAAGACCATCCATCTATCAAGCAT TAAGATGCATGTCATCCTCAAAAATTTTCATTGGAGGTATTTCTTTCCAGACAGATGACAACGGTCTGAAAGAGGCCTTTGATAAATATGGCAATGTTGT TGAAGCAAGAATCATTATGGATCGTGATACTGGCAGATCTAGAGGATTTGGATTCGTTACTTACACCTCCAGTGAGGAGGCCTCTAGTGCCATCCAGGCC ATGGATGGACAGGATCTTCATGGTCGCCGTGTTAGGGTGAATTATGCAACTGAAAGGCCTCAGCGTACCTTTAACAATAATTATGGCAACTATGGTGGTG GAGGATACGGCGGCGGCGGTGGAGGATACGGCGGCGGCGGTGGAGGATACGGCACTGGTGGAGGATATGGCTCTAATTATGCTGGTCAAAGCACTTATGA CGGTGGTGCTGGGAATTATGGTGCTGCTGCTGGTGGTGGCAGAAGCGATGGCTATACCAACACCAGTGTTGATGGTGGATATGATGGAAATGCTGGATTG GGTTATGGTGGCGGCAATCAGTTTGGTGCCAATGAGAGTAGTGGTGATGGTTTGAACCTAGATGATGCGTTGGACAAAAACTCCAAGGAAGATGATGATG CTGGTGATTTTGCCAAAAGGGTATGA
AA sequence Show only first row Show all	>Potri.015G057400.1 pacid=42775981 polypeptide=Potri.015G057400.1.p locus=Potri.015G057400 ID=Potri.015G057400.1.v4.1 annot-version=v4.1 MAFLTKLGNMLRQTANRQITSEISASRPSIYQALRCMSSSKIFIGGISFQTDDNGLKEAFDKYGNVVEARIIMDRDTGRSRGFGFVTYTSSEEASSAIQA MDGQDLHGRRVRVNYATERPQRTFNNNYGNYGGGGYGGGGGGYGGGGGGYGTGGGYGSNYAGQSTYDGGAGNYGAAAGGGRSDGYTNTSVDGGYDGNAGL GYGGGNQFGANESSGDGLNLDDALDKNSKEDDDAGDFAKRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Potri.015G057400 [exp]	0	1
AT4G28510		ATPHB1	prohibitin 1 (.1)		Potri.007G134700 [exp]	3.46	0.8883	PHB1.1
AT5G39850			Ribosomal protein S4 (.1)		Potri.016G076500 [exp]	4.00	0.9070
AT3G56070		ROC2	rotamase cyclophilin 2 (.1.2)		Potri.019G014396 [exp]	20.90	0.8488
AT5G39850			Ribosomal protein S4 (.1)		Potri.016G076800 [exp]	21.35	0.8640
AT5G16060			Cytochrome c oxidase biogenesi...		Potri.017G113401 [exp]	24.10	0.8075
AT5G23535			KOW domain-containing protein ...		Potri.004G062600 [exp]	24.33	0.8713
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Potri.001G454101 [exp]	24.61	0.8703
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Potri.006G102200 [exp]	25.09	0.8326
AT4G36130			Ribosomal protein L2 family (....		Potri.005G115700 [exp]	25.15	0.8787	RPL2.2
AT2G31725			Eukaryotic protein of unknown ...		Potri.013G127400 [exp]	28.28	0.8668

Compare expression of checked genes

Potri.015G057400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.