Plant FIBer expression Database

Potri.015G057600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G61040 309 / 2e-96 unknown protein
AT5G08010 219 / 5e-63 unknown protein
AT5G10890 43 / 0.0006 myosin heavy chain-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G096100
[exp]
120 / 8e-29 AT5G61040 106 / 2e-24 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040520
[exp]
407 / 1e-133 AT5G08010 290 / 2e-89 unknown protein
Lus10021155
[exp]
400 / 1e-130 AT5G61040 287 / 1e-88 unknown protein
PFAM info
Representative CDS sequence
>Potri.015G057600.2 pacid=42775183 polypeptide=Potri.015G057600.2.p locus=Potri.015G057600 ID=Potri.015G057600.2.v4.1 annot-version=v4.1
ATGGATTTATGGGTTGTTGGAGCCGCTGCCGCTGCTGGATATATAGCTAAATATTGGCAAAATCTTTCAAAACATAGGGCTAGTTCATTGGAGTTGTCTT
CTGGAACCTCCACTTGCGAGAAACCTGAAACCTCAAGTTCTCCCTTTCATAAATTGATTAGAAGGAAACAAGCTGAAGACACTCTTACAAGTGGAAGACA
CTTTTCAGATGGAGGATTCTCAGATATTTACCATTTGGACGGTGCTTCAGACACTGAAGCACCATCTACTAGTAGTTTTGGTGAAAGGATTGTAAGATTG
AGAACTTATGATGATTGCAATGTGCTTTCCATGTCGAGCTTACCACCTGGATTCTCAGTAAATGAAAACTTAAAAGAAAATGAGGATGGAAATGGGCTGA
ATGATAATATGGATGATAATTCCGGTAACCCTTATACAGGTGAATTGGATTCTTTTCATTGTTCTGGCAAGAACTCTCTTAGAACTAAACATTCAGGCAG
CCATGTTGTCAAACCTTTTAGCTCACTAGATAGCTGTCTTATGGCTCAGTTATACAAGGAACATGCTAGAATGGAAGAATATGTGCTTAGTGCTCTGCAG
TCACCATCCACTATTATGAAGCCATTACTGATAACTGATGGAACGCAAATAATTAGCAGAGCGGATAGGGATTCTTTAAGTGCACAAATTGCAAGTGATA
ATAATAGGTGGCACAAGGAGGAAATTGTTTGTGGAGTTCCTCCACTACCAAAAATTGGATTTGCAGATCACCTGAAGAAGATAAAATCTAAGAGTGGAAA
GAGGCAGAATGAAAGATCGAGCAGTTCCCAAAAGCACCTACAGTCACCAAATGGTTCACATGATGGAACGGTTTTATTCTGTTTGGGTGTTTCTATTGGT
ATAATCTCTTCTCTCATGGCTAATGGAAGAGAAGTAAACCAGCTAAAAGAAGATTTGAAACATACTCAGAACTTGGTTCAAGATCTACAAGAGGAACTTG
AGATGAAGGATTCATTGACTGTGAAGCAACTGACAAATGAGAACAATGAATCACAAGATACCTGTGATAACTCTTTTCACTACAGGGCATCGAATCCACA
TCTCCTCATACAGAATGTGAATGATTCAATGAACAACATTGGTGCAGTATCATACAATGAGAACACAGAGCAGAGTCCAGAGTCTATGAGTAAAATTGAA
GCAGAGCTTGAAGCCGAGCTTGAGAGGTTGGGGCTAAACATGAATCCATCTGGTCCACCGAGAAGATTGTCTGAACTTGTTGAGCTTGACCCAGACTCTA
CAGCAGATTTTGCTCGAGGAGAACTGAGGCTTGACATGGTCAATCGGCAAGCTGCTGCTCAATCTGAGTCAAATCAAGATGCAAGGGGCACCTCCCCTAC
TTGCTCTGCTAATTATGCAGTTTCACCACGAGAATTGAGCTTGCATCTCCATGAGGTTATTCAGTCAAGACTTCAAGAGCGTGTGAAGGAGCTTGAGACA
GCCCTTCAAAACAGCCAGAGGAAGGTGCATCTCCTGGAATCAGAACATAAGAATGCTCAAAGGTTGTTTTCAACCACCGAGCTAAGATACTCCTCTGGGG
AAGTAAGTCCAGTTGTTGAAGGAGATTTCAGTTGCATAGATCAGCCTCTAGTTATGAATTTATCTAGGGAAGCCCTGGATGCGTACAATGAGGCATATGA
AGAGCTAAACAAGATGAATGAATCTGAGGAAGAAGATTCACTGTCAGGGGATTTTGAAGACAATCAAGCGGGCTTGCATCTATTTGACCAGAGGGTGTCA
TGGGGTCAAAATGGCAGGGCAAATGGTTCCTTTTCACTTTCTTCACATAATCAAGAAAAGACACCAAACGATCTACACACGGGTCCATTAAAGTCATCGG
CAGAGTATGGCGCAGGAATTGAGGAATTGCTTTATGATAGGATAAGTGAAGATGAAAACAGTGATTGTGATGATGAGATGGAGAAGCAGTTGATACAGCA
GATTGTAGAGAAGACCAAGAAAGGCTCTCCTGTAGTGCTAAATGCACAAAGGTTGTTGTTTTCAGTGGATGACAATGAACATTAA
AA sequence
>Potri.015G057600.2 pacid=42775183 polypeptide=Potri.015G057600.2.p locus=Potri.015G057600 ID=Potri.015G057600.2.v4.1 annot-version=v4.1
MDLWVVGAAAAAGYIAKYWQNLSKHRASSLELSSGTSTCEKPETSSSPFHKLIRRKQAEDTLTSGRHFSDGGFSDIYHLDGASDTEAPSTSSFGERIVRL
RTYDDCNVLSMSSLPPGFSVNENLKENEDGNGLNDNMDDNSGNPYTGELDSFHCSGKNSLRTKHSGSHVVKPFSSLDSCLMAQLYKEHARMEEYVLSALQ
SPSTIMKPLLITDGTQIISRADRDSLSAQIASDNNRWHKEEIVCGVPPLPKIGFADHLKKIKSKSGKRQNERSSSSQKHLQSPNGSHDGTVLFCLGVSIG
IISSLMANGREVNQLKEDLKHTQNLVQDLQEELEMKDSLTVKQLTNENNESQDTCDNSFHYRASNPHLLIQNVNDSMNNIGAVSYNENTEQSPESMSKIE
AELEAELERLGLNMNPSGPPRRLSELVELDPDSTADFARGELRLDMVNRQAAAQSESNQDARGTSPTCSANYAVSPRELSLHLHEVIQSRLQERVKELET
ALQNSQRKVHLLESEHKNAQRLFSTTELRYSSGEVSPVVEGDFSCIDQPLVMNLSREALDAYNEAYEELNKMNESEEEDSLSGDFEDNQAGLHLFDQRVS
WGQNGRANGSFSLSSHNQEKTPNDLHTGPLKSSAEYGAGIEELLYDRISEDENSDCDDEMEKQLIQQIVEKTKKGSPVVLNAQRLLFSVDDNEH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G61040 unknown protein Potri.015G057600
[exp]
0 1
AT1G33810 unknown protein Potri.019G076400
[exp]
4.47 0.8201
AT1G49180 protein kinase family protein ... Potri.019G011300
[exp]
5.00 0.7820
AT3G45740 hydrolase family protein / HAD... Potri.008G045700
[exp]
21.21 0.7477
AT3G29230 Tetratricopeptide repeat (TPR)... Potri.012G140400
[exp]
22.22 0.7568
AT1G27070 5'-AMP-activated protein kinas... Potri.008G194300
[exp]
23.47 0.7480
AT1G16250 Galactose oxidase/kelch repeat... Potri.010G004500
[exp]
27.34 0.7358
Potri.008G024601
[exp]
29.29 0.7807
AT1G53720 ATCYP59, CYP59 cyclophilin 59 (.1) Potri.007G067000
[exp]
30.96 0.7793
AT3G02540 RAD23C, RAD23-3 RADIATION SENSITIVE23C, PUTATI... Potri.004G100700
[exp]
32.83 0.6993
AT2G20830 transferases;folic acid bindin... Potri.013G145700
[exp]
34.07 0.7366

Potri.015G057600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.