Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATPC.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33040 513 / 0 ATP3 gamma subunit of Mt ATP synthase (.1) AT4G04640 112 / 4e-28 ATPC1 ATPase, F1 complex, gamma subunit protein (.1) AT1G15700 111 / 8e-28 ATPC2 ATPase, F1 complex, gamma subunit protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G066100 [exp] 607 / 0 AT2G33040 515 / 0.0 gamma subunit of Mt ATP synthase (.1) Potri.011G024700 [exp] 119 / 1e-30 AT4G04640 518 / 0.0 ATPase, F1 complex, gamma subunit protein (.1) Potri.004G014850 [exp] 107 / 3e-26 AT4G04640 557 / 0.0 ATPase, F1 complex, gamma subunit protein (.1) Potri.011G003800 [exp] 57 / 4e-09 AT4G04640 140 / 2e-39 ATPase, F1 complex, gamma subunit protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042366 [exp] 578 / 0 AT2G33040 508 / 0.0 gamma subunit of Mt ATP synthase (.1) Lus10012200 [exp] 566 / 0 AT5G13650 1019 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10007534 [exp] 464 / 1e-166 AT2G33040 445 / 3e-159 gamma subunit of Mt ATP synthase (.1) Lus10040068 [exp] 107 / 4e-26 AT4G04640 497 / 3e-177 ATPase, F1 complex, gamma subunit protein (.1) Lus10002078 [exp] 105 / 2e-25 AT4G04640 595 / 0.0 ATPase, F1 complex, gamma subunit protein (.1) Lus10021535 [exp] 99 / 3e-23 AT4G04640 496 / 6e-177 ATPase, F1 complex, gamma subunit protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00231 [poplar] [flax] ATP-synt ATP synthase
Representative CDS sequence Show only first row Show all	>Potri.015G057700.2 pacid=42774826 polypeptide=Potri.015G057700.2.p locus=Potri.015G057700 ID=Potri.015G057700.2.v4.1 annot-version=v4.1 ATGGCGATGGCAGCTGCTTTGAGACGCGAAGGAAGGAGATTTGCCTCCCCTCTCATTTCCCCTCAACCATTCACCCCCGTCCGATCCGCTCTCATCCCCG AGGAGCATGTCCCTCTTGGAGTGCGTTCCATTTCAACTCAAGTTGTTCGGAATCGGATGAAAAGTGTCAAGAACATTCAGAAAATTACGAAGGCTATGAA GATGGTTGCAGCCTCAAAGTTGCGATTAATTCAATCTAGAGCTGAAAAATCTCGTGGCCTATGGCAACCATTTACTGCGCTTCTTGGAGATACTCCTAGT GTTGATGTAAAGAAGAATGTGATTGTCACCGTATCTTCGGACAAAGGTCTGTGTGGTGGAATTAACTCTACAGCAGTCAAGGTCAGCAGGGCCATTAACA AGTTGACTTCAGGTCCTGACAAAGAAACTAAATTTGTCATCTTGGGAGAAAAGGCAAAGGTGCAGTTGATACGTGATTCAAAAAAGAGCATTACAATATG CATGACAGAGTTGCAGAAGAATCCTCTGAATTATACCCAGGTCTCTGTTCTGGCAGATGACATTTTAAAGAATGTGGAATATGATGCTTTGAGGATTGTC TTCAACAAGTTCCAGTCAGTGGTCTCATTTCTTCCAACTATGACAACTGTATTATCTCCTGAGGTTGTGGAGAGAGAGGCTGAATCTGATGGGAAGCTTG GTGATCTTGATTCCTATGAGATTGAAGGTGGTGAAACAAAGGGTGAAATACTTCAGAATCTTGCCGAGTTCCAGTTTTCTTGTGTTCTGTTCAATGCGGT AATGGAGAATGCTTGCAGTGAGCAAGGTGCAAGAATGTCTGCTATGGACAGTTCAAGCAGAAATGCTGGAGATATGCTTGATCGCCTGACACTGACTTAT AACAGAACTCGTCAAGCATCTATCACAACGGAGTTGAGTGAGATTATATCCGGAGCAGCTGCACTGGAGGGTTAA
AA sequence Show only first row Show all	>Potri.015G057700.2 pacid=42774826 polypeptide=Potri.015G057700.2.p locus=Potri.015G057700 ID=Potri.015G057700.2.v4.1 annot-version=v4.1 MAMAAALRREGRRFASPLISPQPFTPVRSALIPEEHVPLGVRSISTQVVRNRMKSVKNIQKITKAMKMVAASKLRLIQSRAEKSRGLWQPFTALLGDTPS VDVKKNVIVTVSSDKGLCGGINSTAVKVSRAINKLTSGPDKETKFVILGEKAKVQLIRDSKKSITICMTELQKNPLNYTQVSVLADDILKNVEYDALRIV FNKFQSVVSFLPTMTTVLSPEVVEREAESDGKLGDLDSYEIEGGETKGEILQNLAEFQFSCVLFNAVMENACSEQGARMSAMDSSSRNAGDMLDRLTLTY NRTRQASITTELSEIISGAAALEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33040		ATP3	gamma subunit of Mt ATP syntha...		Potri.015G057700 [exp]	0	1	Pt-ATPC.2
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Potri.012G100400 [exp]	3.00	0.9335
AT2G27020		PAG1	20S proteasome alpha subunit G...		Potri.009G020800 [exp]	4.00	0.9309	PAG1.2
AT1G51650			ATP synthase epsilon chain, mi...		Potri.008G008900 [exp]	4.58	0.9191
AT4G37830			cytochrome c oxidase-related (...		Potri.007G008800 [exp]	6.92	0.9259
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Potri.013G051500 [exp]	8.66	0.9235
AT2G42210		ATOEP16-3	Mitochondrial import inner mem...		Potri.006G059300 [exp]	8.94	0.9252
AT5G20500			Glutaredoxin family protein (....		Potri.018G133400 [exp]	11.95	0.9067
AT2G47690			NADH-ubiquinone oxidoreductase...		Potri.014G129600 [exp]	12.00	0.8766
AT1G79550		PGK	phosphoglycerate kinase (.1.2)		Potri.008G084400 [exp]	13.26	0.8972
AT3G10220		EMB2804	EMBRYO DEFECTIVE 2804, tubulin...		Potri.006G041400 [exp]	13.41	0.9204

Compare expression of checked genes

Potri.015G057700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.