Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61010 575 / 0 ATEXO70E2 exocyst subunit exo70 family protein E2 (.1.2) AT3G29400 483 / 1e-163 ATEXO70E1 exocyst subunit exo70 family protein E1 (.1) AT5G50380 410 / 6e-135 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT3G14090 363 / 3e-117 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G54090 345 / 1e-110 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT1G72470 329 / 3e-104 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT5G03540 307 / 4e-97 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT5G58430 304 / 2e-94 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1) AT5G52340 298 / 2e-92 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1) AT1G07000 290 / 1e-89 ATEXO70B2 exocyst subunit exo70 family protein B2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G093966 [exp] 615 / 0 AT3G29400 597 / 0.0 exocyst subunit exo70 family protein E1 (.1) Potri.015G094800 [exp] 443 / 6e-148 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.012G097100 [exp] 437 / 1e-145 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.017G093700 [exp] 436 / 6e-145 AT3G29400 404 / 4e-132 exocyst subunit exo70 family protein E1 (.1) Potri.001G166400 [exp] 361 / 2e-116 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.003G068700 [exp] 351 / 1e-112 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.013G152900 [exp] 322 / 3e-101 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.019G124000 [exp] 311 / 2e-97 AT5G58430 726 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.008G017800 [exp] 303 / 7e-94 AT5G03540 960 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031956 [exp] 550 / 0 AT3G29400 581 / 0.0 exocyst subunit exo70 family protein E1 (.1) Lus10035146 [exp] 543 / 0 AT3G29400 579 / 0.0 exocyst subunit exo70 family protein E1 (.1) Lus10016764 [exp] 421 / 2e-139 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10022459 [exp] 391 / 2e-128 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10008126 [exp] 341 / 3e-108 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10013163 [exp] 329 / 1e-106 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10021283 [exp] 296 / 2e-91 AT5G52340 995 / 0.0 exocyst subunit exo70 family protein A2 (.1) Lus10043432 [exp] 282 / 7e-86 AT5G03540 1004 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10005436 [exp] 270 / 1e-81 AT5G59730 535 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10015221 [exp] 269 / 4e-81 AT2G39380 533 / 0.0 exocyst subunit exo70 family protein H2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF03081 [poplar] [flax] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Potri.015G058200.4 pacid=42776059 polypeptide=Potri.015G058200.4.p locus=Potri.015G058200 ID=Potri.015G058200.4.v4.1 annot-version=v4.1 ATGCCCGGCTGTCAATCAATGACGACGACGACTTATGAAGGGGAACAACATATCATTGCTGCAGCTCAGCATATTTTGAAGTTATTGGGAGAAAATAAGA ACCTGACTGGTGACTTTAGACGAGCCCTCACAGAACTGGACTCCCATTTGTCTGCAATGACTATAATAAATGAAAGCAAGAGATGGGGATTTGCTGAGGT TGAGGAGCAGCTGAAATGTGCTGAGAGAAAGGTCATGCGTTGGGAGTCTAATCCATCTCTGATATGGGATTCTGGACCCGCAGAGGCTTCTGAGTACATA CAAGCCGTTAATGAAATTCACACGGTGATGGAAACTTTAGGTGGCTTGCCCATGAATGACCATGGGAGGCCGAAGGAACTTGCTTTCCGAGCTCAGTGTG TTCAGCAGATAGCAATGTCAAGGCTTGAGGAAGAGCTCTACCACATTCTTGTTCAACATAAGCAATCCTTTGAGCCGAAGAACATTTATTTTCCCCCAAG TGTTGATTTTTTCTATGATGAGTCGTTTGTTTCGGTAGAGGATGAAATAGTCGAGGATACATCACAGAGAGACAACAGTGGAAGAGAATCTACTGAATAT ACAGTAGATTTGATTGATCCACTTGTGATTCCTGACATCAAGTCCATTGCTAGTGTTATGTTTGCTTCTGGTTATGATAGGGAATTCTGTGAGGCTTTCA TTGGCAACCGTAAAGAAGCATTGGATGAGCATTTGTCCAACCTTGAAATTCAGAAACTCAGCATCGATGATGTATTAAAACTAGAATGGGATACCTTGAG TTGTGAAATTAAGAAATGGGTGAGGGCTGTGAAAATCATCATTCGGGTCTATCTTGCTAGTGAGAAACGGTTTTGCAACCAGATATTAGGGGATTTTGGT TCCCTCGATTCATATTGTTTTGTTGAGATCTCAAGGGCTTCAGTTTTGTACCTATTGAGTTTTGGTGAAGCCATAGCAATGGGACCCTATAATCCTGAAA AGTTGTTTCGCTTTCTTGACATGTACGAGGTTCTGGCAGATCTTCACCTTGATATGGAAGCTTTATTCTCTGAAGTGGCCAATTCTTATGTTACGAGCGA GTTCCATGACCTTCTTAGGAGATTGGGTGAATCTGCAAGTACCACTTTTTTTAAATTTGGGAATGCCATTGCATTGCATGCCTCCATACACCCTTTCCGC AGAGGTGAAATCCATCCCCTCACTAGGTATGTGATGAATTACATCAAGACCCTTACTGCATACTGTGATACTCTCAATTTGCTTCTCAATGACCAAGGTG TAGATGATCCGAATCCTGTTCTTGAGACAGATAATGGGCAGGACATTTGTACTTCTACTTTTAGTCCCATGGGTTGCCACCTTAGGTCAATTACATCTAC TCTAGAATCGAATCTTATTTGCAAATCCAAATTATACAAGGATGGTTCTTTAGGGCATATTTTCTTAATGAACAACATCCATTACATGGTCCAGAAGGTC AAGGGCTCTGAACTCAGGCTTTTCTTTGGAGATGAATGGATCAGAAAGCATAATGGGAAGTTTCAGCAGCATGCAACAAGCTATGAGAGAGCCACATGGA GTGTTGTTGTTTCTTTGCTTAGAGATGATGGAAGGACTTCTCTGAAAGAAAGGTGCAGGAGATTCAGTAATGCTTTCGACGATGTGTACAAAATTCAGAC ACAGTGGCGTGTTCCAGATCTTCATCTCCGGGAAGATTTGCAAATTTCTACTTCACAGAAAGTAATCCCAGCTTATCGAGCTTTCCTTGGAATGAACGAC AAAAATGGTAGCGACAAGTACATCAAGTACACTTCTGATGATATGGAGAAAATGCTTTTGGATCTTTTTGTAGGATCACCAAGGTCATTGCGCAATTCAC ACAAGTGGTGA
AA sequence Show only first row Show all	>Potri.015G058200.4 pacid=42776059 polypeptide=Potri.015G058200.4.p locus=Potri.015G058200 ID=Potri.015G058200.4.v4.1 annot-version=v4.1 MPGCQSMTTTTYEGEQHIIAAAQHILKLLGENKNLTGDFRRALTELDSHLSAMTIINESKRWGFAEVEEQLKCAERKVMRWESNPSLIWDSGPAEASEYI QAVNEIHTVMETLGGLPMNDHGRPKELAFRAQCVQQIAMSRLEEELYHILVQHKQSFEPKNIYFPPSVDFFYDESFVSVEDEIVEDTSQRDNSGRESTEY TVDLIDPLVIPDIKSIASVMFASGYDREFCEAFIGNRKEALDEHLSNLEIQKLSIDDVLKLEWDTLSCEIKKWVRAVKIIIRVYLASEKRFCNQILGDFG SLDSYCFVEISRASVLYLLSFGEAIAMGPYNPEKLFRFLDMYEVLADLHLDMEALFSEVANSYVTSEFHDLLRRLGESASTTFFKFGNAIALHASIHPFR RGEIHPLTRYVMNYIKTLTAYCDTLNLLLNDQGVDDPNPVLETDNGQDICTSTFSPMGCHLRSITSTLESNLICKSKLYKDGSLGHIFLMNNIHYMVQKV KGSELRLFFGDEWIRKHNGKFQQHATSYERATWSVVVSLLRDDGRTSLKERCRRFSNAFDDVYKIQTQWRVPDLHLREDLQISTSQKVIPAYRAFLGMND KNGSDKYIKYTSDDMEKMLLDLFVGSPRSLRNSHKW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61010		ATEXO70E2	exocyst subunit exo70 family p...		Potri.015G058200 [exp]	0	1
AT4G33890			unknown protein		Potri.009G090400 [exp]	1.41	0.7799
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G002200 [exp]	7.14	0.7626	Pt-CNGC.2
AT1G22220		AUF2	auxin up-regulated f-box prote...		Potri.001G021600 [exp]	7.48	0.7168
AT5G52230		MBD13	methyl-CPG-binding domain prot...		Potri.012G138300 [exp]	9.21	0.7352	MBD912
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.013G130800 [exp]	11.40	0.7007
					Potri.001G353250 [exp]	13.34	0.6119
AT3G07870			F-box and associated interacti...		Potri.002G223000 [exp]	14.35	0.7660
AT1G14670			Endomembrane protein 70 protei...		Potri.012G042300 [exp]	15.55	0.7082
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Potri.002G073400 [exp]	17.32	0.7255	Pt-SCL1.2
AT1G14780			MAC/Perforin domain-containing...		Potri.002G234700 [exp]	20.19	0.6692

Compare expression of checked genes

Potri.015G058200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.