Plant FIBer expression Database

Potri.015G058301 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G29900 430 / 2e-149 PS2 Presenilin-2 (.1)
AT1G08700 315 / 2e-103 PS1 Presenilin-1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G067700
[exp]
220 / 7e-67 AT1G08700 494 / 1e-173 Presenilin-1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031966
[exp]
453 / 3e-158 AT2G29900 471 / 3e-166 Presenilin-2 (.1)
Lus10035137
[exp]
374 / 7e-129 AT2G29900 410 / 1e-143 Presenilin-2 (.1)
Lus10020339
[exp]
322 / 2e-106 AT1G08700 531 / 0.0 Presenilin-1 (.1)
Lus10009518
[exp]
305 / 7e-100 AT1G08700 538 / 0.0 Presenilin-1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0130 Peptidase_AD PF01080 Presenilin Presenilin
Representative CDS sequence
>Potri.015G058301.3 pacid=42776362 polypeptide=Potri.015G058301.3.p locus=Potri.015G058301 ID=Potri.015G058301.3.v4.1 annot-version=v4.1
ATGGCTCAAAACCGAAGACCCAAAAGTGTTCTTGATTCTTTAGGTGAAGAACTAGTCAGAATCATCACACCAGTCTCAATCTGCATGTTCCTGGTGGTGG
TTCTGGTTTCAATTCTCAATACGGACTCCTCCTCTTCAGCTTCATCAATTAACACCATAGCTACCATAGCTTACAATGAGACAACATCTGACTCCTTTTG
GGACAAATTCAAAGGTGCCCTTATCAACTCCCTTATCTTTGTGGCTATAATCACTCTTGTTACTTTTGTTTTGGTGATTCTCTTTTACCTCAGATGCACT
CATTTCTTGAAACTCTACATGGGTTTCTCTTCCTTTTTAGTTCTGGGATTTATGGGTGGTGAGATTGCTTTGTTTCTTATCGGAGATTTTAATATTCCCA
TTGATTCTATCACTTTTCTTGTGATTTTGTTCAACTTTGCTTCTGTGGGTGTTTTGGCCGTGTTCATGTCAAAAATGGCTATATTTGTGACACAAGGGTA
TTTGGTTGTTATTGGGGTTTTAGTTGCTTATTGGTTTACTCTTTTGCCTGAATGGACTACTTGGGTACTATTGGTTGCCTTGGCATTGTATGATCTTGCT
GCTGTTTTATTGCCTGTTGGTCCATTAAGGATCCTGGTAGAGCTTGCAATCTCTAGGGATGAAGATATCCCTGCGTTAGTTTATGAAGCTCGGCCCGTGA
CTAATCATGATTCAGGCTCAAGGGATGGTGTGGTTCGAAGGAGGGTATGGAGAGAAAGGAGCAGTGTTGGAAATGGTTCTGATGAGAATTTGAATTCTGA
GACTAATTCTAATCTCAGTTTGGATTCTGAGTCTGTTGTCGATTCTAACTTGACTCGTGGCACAGTTAATTCAATTGGTAGTGACCACAATGACAGAATA
TTGATTGGAGCTGAACAAGGGCAAGTTTTGGAAAGGGAGGCTGAGCTTTCTGCACCATTAATTGATCGTAGGACGAGCGTTCAGTTGCACGGACAGGAAA
ACTCTGCATCCAGGGAGAATTTGCTGCTAGAAGGTATTGGGTTGGGGTCAACTGGTGCTATCAAACTGGGGCTGGGGGACTTTATCTTTTACAGCGTCTT
AGTTGGGAGAGCAGCTATGTATGACTTTATGACTGTATATGCATGCTATCTTGCTATTATAGCAGGTCTGGGAGTTACTCTGATGCTATTGGCGTTTTAT
CAGAAAGCTTTGCCAGCTCTTCCGGTGTCAATTGCACTAGGCGTGTTGTTTTATTTCTTGACTCGGCTATTACTTGAAGTTTTTGTTGTACAATGTTCTT
TGAACCTTGTAATGTTTTAG
AA sequence
>Potri.015G058301.3 pacid=42776362 polypeptide=Potri.015G058301.3.p locus=Potri.015G058301 ID=Potri.015G058301.3.v4.1 annot-version=v4.1
MAQNRRPKSVLDSLGEELVRIITPVSICMFLVVVLVSILNTDSSSSASSINTIATIAYNETTSDSFWDKFKGALINSLIFVAIITLVTFVLVILFYLRCT
HFLKLYMGFSSFLVLGFMGGEIALFLIGDFNIPIDSITFLVILFNFASVGVLAVFMSKMAIFVTQGYLVVIGVLVAYWFTLLPEWTTWVLLVALALYDLA
AVLLPVGPLRILVELAISRDEDIPALVYEARPVTNHDSGSRDGVVRRRVWRERSSVGNGSDENLNSETNSNLSLDSESVVDSNLTRGTVNSIGSDHNDRI
LIGAEQGQVLEREAELSAPLIDRRTSVQLHGQENSASRENLLLEGIGLGSTGAIKLGLGDFIFYSVLVGRAAMYDFMTVYACYLAIIAGLGVTLMLLAFY
QKALPALPVSIALGVLFYFLTRLLLEVFVVQCSLNLVMF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G29900 PS2 Presenilin-2 (.1) Potri.015G058301
[exp]
0 1
AT3G06760 Drought-responsive family prot... Potri.011G057200
[exp]
3.16 0.7479
AT3G20970 ATNFU2, NFU4 ARABIDOPSIS THALIANA NFU DOMAI... Potri.010G237400
[exp]
3.31 0.7895 NFU4.2
AT5G03290 IDH-V isocitrate dehydrogenase V (.1... Potri.006G126700
[exp]
4.58 0.7454
AT3G52740 unknown protein Potri.009G164000
[exp]
6.32 0.7128
AT1G63900 DAL1 DIAP1-like protein 1, E3 Ubiqu... Potri.014G138000
[exp]
7.54 0.6698 Pt-ZCF61.1
AT2G36305 RCE1, ATFACE2, ... RAS-CONVERTING ENZYME 1, ARABI... Potri.006G083300
[exp]
9.59 0.6602
AT3G47810 ATVPS29, MAG1 VACUOLAR PROTEIN SORTING 29, M... Potri.001G354000
[exp]
9.79 0.7243
AT2G21600 ATRER1B endoplasmatic reticulum retrie... Potri.005G228900
[exp]
10.24 0.7205 RER1.4
AT5G42960 unknown protein Potri.014G181000
[exp]
11.31 0.7362
AT1G17720 ATBBETA, ATB BE... Protein phosphatase 2A, regula... Potri.001G197300
[exp]
14.49 0.6624 Pt-ATB.1

Potri.015G058301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.