Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74210 611 / 0 AtGDPD5 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1) AT5G08030 601 / 0 AtGDPD6 glycerophosphodiester phosphodiesterase 6, PLC-like phosphodiesterases superfamily protein (.1) AT3G20520 86 / 8e-18 GDPDL5, SVL3 Glycerophosphodiester phosphodiesterase \(GDPD\) like 5, SHV3-like 3 (.1) AT5G58170 79 / 1e-15 GDPDL7, SVL5 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) AT4G26690 79 / 1e-15 GDPDL3, GPDL2, MRH5, SHV3 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) AT1G66970 79 / 1e-15 GDPDL1, SVL2 Glycerophosphodiester phosphodiesterase \(GDPD\) like 1, SHV3-like 2 (.1.2) AT5G55480 76 / 1e-14 GPDL1, GDPDL4, SVL1 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) AT5G58050 76 / 2e-14 GDPDL6, SVL4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) AT1G66980 67 / 1e-11 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G360800 [exp] 100 / 2e-22 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.018G110600 [exp] 98 / 8e-22 AT5G58050 870 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) Potri.001G360700 [exp] 96 / 3e-21 AT4G26690 835 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.006G187600 [exp] 92 / 6e-20 AT5G58170 893 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040516 [exp] 607 / 0 AT5G08030 588 / 0.0 glycerophosphodiester phosphodiesterase 6, PLC-like phosphodiesterases superfamily protein (.1) Lus10021152 [exp] 524 / 0 AT5G08030 503 / 1e-179 glycerophosphodiester phosphodiesterase 6, PLC-like phosphodiesterases superfamily protein (.1) Lus10032576 [exp] 92 / 6e-20 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10019606 [exp] 91 / 1e-19 AT5G58170 454 / 9e-151 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10019605 [exp] 82 / 1e-16 AT5G58170 670 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10031604 [exp] 81 / 5e-16 AT4G26690 817 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10016584 [exp] 79 / 1e-15 AT4G26690 801 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10040037 [exp] 77 / 7e-15 AT1G66980 580 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10018042 [exp] 75 / 3e-14 AT5G55480 721 / 0.0 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) Lus10014903 [exp] 74 / 9e-14 AT4G26690 833 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [poplar] [flax] PLC PF03009 [poplar] [flax] GDPD Glycerophosphoryl diester phosphodiesterase family
Representative CDS sequence Show only first row Show all	>Potri.015G058400.7 pacid=42774827 polypeptide=Potri.015G058400.7.p locus=Potri.015G058400 ID=Potri.015G058400.7.v4.1 annot-version=v4.1 ATGTCTTCAACTTGCTCAGGCTTTGGTTTTGGCTTTGCTCCAATCTTATTTCTATCACTCGTAGTTGCATGTGCTGCGAGGCCTATCTATCCTCTCCCTA GTAAAGTAAGCCATGGTAATAGACTGCCTCTACAGACTTCTCGACCGTATAATATTGCTCATCGAGGATCAAATGGAGAGATTCCTGAAGAAACTTCTGC TGCATACATGAGAGCCATTGAGGAGGGAGCTGACTTCATAGAAACCGATATCCTGTCCTCCAAAGATGGGGTTCTTATATGCTTCCATGATGTTACCCTT GATGACACAACTGACATTGCAGATCATAAGGAGTTTGCAAATCGTAAAAGAACCTATGACGTTCAAGGGGTCAACACCACTGGCTTCTTCACCGTTGATT TCACTTTGACAGAACTGAAGTTGTTACGTGTGAAGCAGAGGTATAGTTTCCGGGATCAACAATATAATGGAATGTTTCCTATTATCACTTTCGAAGAATT CATATCAATTGCACTGGATGCACCAAGAGTTGTTGGAATATATCCAGAGATTAAGAATCCGATTCTCATAAACCAGCATGTGAAATGGCCTGATGGTAAG AAATTTGAGGACAAGTTTGTGGGGATACTTAAGAAGTACGGATACAGGGGTTCATATATGTCTGAAAATTGGCTGAAACAGCCATTGTTTATCCAGTCTT TCGCTCCAACTTCACTTGTATATATATCAAATCTGACAGACTCGCCCAAAATCTTCCTGATTGATGATGTTACCATTCCAACTCAAGACACTAATCAGTC ATATTGGGAAATCACTTCCGATGCTTATCTAGACTACATCAAGGACTATGTGGTGGGTATTGGACCTTGGAAGGATACGATAGTTCCTGTAGGGAAAAAT TATTTGCAAATACCCTCAAATCTTGTTGCTAGAGCACATGCCCATGATCTACAGGTGCACCCTTACACTTACAGAAATGAGAACAAATTCTTACACTTCG ACTTCCACCAAGACCCATATGAGGAATATGATTATTGGTTAAACAATATACGAGTTGATGGACTCTTTACAGACTTCACAGGCAGCCTCCATAATTTTCA GGAATGGACTTCTCCTCTCTCTAAGGATGGTGGTGACGAAAACAGTGCATCAAAGTTATTGCATAAAATAGCTTTGTTAATCTCGTCATATAAAAATTGA
AA sequence Show only first row Show all	>Potri.015G058400.7 pacid=42774827 polypeptide=Potri.015G058400.7.p locus=Potri.015G058400 ID=Potri.015G058400.7.v4.1 annot-version=v4.1 MSSTCSGFGFGFAPILFLSLVVACAARPIYPLPSKVSHGNRLPLQTSRPYNIAHRGSNGEIPEETSAAYMRAIEEGADFIETDILSSKDGVLICFHDVTL DDTTDIADHKEFANRKRTYDVQGVNTTGFFTVDFTLTELKLLRVKQRYSFRDQQYNGMFPIITFEEFISIALDAPRVVGIYPEIKNPILINQHVKWPDGK KFEDKFVGILKKYGYRGSYMSENWLKQPLFIQSFAPTSLVYISNLTDSPKIFLIDDVTIPTQDTNQSYWEITSDAYLDYIKDYVVGIGPWKDTIVPVGKN YLQIPSNLVARAHAHDLQVHPYTYRNENKFLHFDFHQDPYEEYDYWLNNIRVDGLFTDFTGSLHNFQEWTSPLSKDGGDENSASKLLHKIALLISSYKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74210		AtGDPD5	glycerophosphodiester phosphod...		Potri.015G058400 [exp]	0	1
AT1G80780			Polynucleotidyl transferase, r...		Potri.003G181100 [exp]	2.00	0.7554
AT2G47590		PHR2	photolyase/blue-light receptor...		Potri.014G128500 [exp]	3.31	0.7142
AT5G56540		ATAGP14, AGP14	arabinogalactan protein 14 (.1...		Potri.003G220900 [exp]	3.87	0.7391
AT3G62650			unknown protein		Potri.014G124900 [exp]	17.32	0.6939
AT4G26850		VTC2	mannose-1-phosphate guanylyltr...		Potri.001G355600 [exp]	21.49	0.7371	VTC2.2
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Potri.004G168000 [exp]	26.24	0.6683
AT3G18280			Bifunctional inhibitor/lipid-t...		Potri.004G096000 [exp]	42.42	0.7129
AT2G39420			alpha/beta-Hydrolases superfam...		Potri.008G049000 [exp]	43.26	0.6811
AT1G55930			CBS domain-containing protein ...		Potri.001G362100 [exp]	73.44	0.6419
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Potri.011G022400 [exp]	86.34	0.6361

Compare expression of checked genes

Potri.015G058400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.