Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08050 118 / 5e-34 Protein of unknown function (DUF1118) (.1) AT1G74730 47 / 1e-06 Protein of unknown function (DUF1118) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G065100 [exp] 59 / 9e-11 AT1G74730 142 / 7e-43 Protein of unknown function (DUF1118) (.1) Potri.012G070600 [exp] 49 / 2e-07 AT1G74730 132 / 5e-39 Protein of unknown function (DUF1118) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040515 [exp] 129 / 2e-37 AT5G08050 167 / 7e-53 Protein of unknown function (DUF1118) (.1) Lus10021151 [exp] 103 / 9e-28 AT5G08050 143 / 1e-43 Protein of unknown function (DUF1118) (.1) Lus10004269 [exp] 50 / 9e-08 AT1G74730 199 / 3e-65 Protein of unknown function (DUF1118) (.1) Lus10042179 [exp] 50 / 9e-08 AT1G74730 199 / 3e-65 Protein of unknown function (DUF1118) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06549 [poplar] [flax] DUF1118 Protein of unknown function (DUF1118)
Representative CDS sequence Show only first row Show all	>Potri.015G058600.2 pacid=42775316 polypeptide=Potri.015G058600.2.p locus=Potri.015G058600 ID=Potri.015G058600.2.v4.1 annot-version=v4.1 ATGGAGGCCACAGCATTGTGTGGCAGCAGAGGACCTCCATTCAGAATGAAAGCAGCAGCAGCAGCTATATCACATACTAATTCTTCACCTCTTCTAATCA AATCCATGGCCTCCCAGAAGCCTTTGCCATCAGCTGCCAAGACTGTTAGCTCTAGAAAGAGCTCAAATGTCTTCCCCCCTGGCGAGCAAGGCCCTAGAAG CCGCCCACTCGCAACCTCACCTCCAATTAAGCTACTGACAAGGGTGGAGCAACTTAAATTACTAACCAAAGCTGAGAAAGCAGGCTTACTTTCAGCAGCA GAGAAGTTTGGCCTCTCCTTGTCAACAATAGAGAAACTGGGGCTACTCTCGAAGGCAGAAGAATTGGGAGTCCTCTCAGCAGCTACAGACCCGGGAACCC CAGGGGCTTTGTTAAGCCTTAGCCTGGGACTGCTGTTTTTAGGACCCTCTTGTGCCTATCTTGTGCCCGAGGATTACCCTTGGGAGGTTGCTTTGCAAGT TGCAGTTGTTCTGCTTTGCGTAGCTGGTGGATCTGCAGCCTTTGCAGCTTCAAATTTTGTATCCAACTTGCAGAAATCAAATTGA
AA sequence Show only first row Show all	>Potri.015G058600.2 pacid=42775316 polypeptide=Potri.015G058600.2.p locus=Potri.015G058600 ID=Potri.015G058600.2.v4.1 annot-version=v4.1 MEATALCGSRGPPFRMKAAAAAISHTNSSPLLIKSMASQKPLPSAAKTVSSRKSSNVFPPGEQGPRSRPLATSPPIKLLTRVEQLKLLTKAEKAGLLSAA EKFGLSLSTIEKLGLLSKAEELGVLSAATDPGTPGALLSLSLGLLFLGPSCAYLVPEDYPWEVALQVAVVLLCVAGGSAAFAASNFVSNLQKSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08050			Protein of unknown function (D...		Potri.015G058600 [exp]	0	1
AT5G58260		NdhN	NADH dehydrogenase-like comple...		Potri.013G160600 [exp]	1.00	0.9903
AT5G52190			Sugar isomerase (SIS) family p...		Potri.015G140600 [exp]	2.44	0.9812
AT1G67740		YCF32, PSBY	photosystem II BY (.1)		Potri.008G181900 [exp]	3.46	0.9828	PSBY.1
AT1G22630			unknown protein		Potri.013G108100 [exp]	4.47	0.9756
AT1G34000		OHP2	one-helix protein 2 (.1)		Potri.002G065000 [exp]	6.63	0.9689	Lil6_1,OHP2.2
AT2G32480		ARASP	ARABIDOPSIS SERIN PROTEASE (.1...		Potri.014G154000 [exp]	8.48	0.9714
AT1G26220			Acyl-CoA N-acyltransferases (N...		Potri.008G113600 [exp]	9.74	0.9750
AT1G42550		PMI1	plastid movement impaired1 (.1...		Potri.005G255500 [exp]	10.19	0.9657
AT5G07900			Mitochondrial transcription te...		Potri.001G035200 [exp]	11.83	0.9710
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Potri.013G039400 [exp]	12.12	0.9535

Compare expression of checked genes

Potri.015G058600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.