Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60980 382 / 1e-128 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT3G25150 271 / 2e-85 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT1G13730 208 / 8e-62 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) AT2G03640 199 / 2e-58 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain AT5G48650 192 / 1e-55 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) AT1G69250 172 / 3e-48 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT5G43960 159 / 2e-43 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT3G07250 136 / 8e-34 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (.1) AT1G27970 53 / 3e-08 NTF2B nuclear transport factor 2B (.1.2) AT1G27310 48 / 1e-06 NTF2A nuclear transport factor 2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G094600 [exp] 331 / 7e-109 AT5G60980 286 / 6e-92 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.002G246600 [exp] 283 / 1e-89 AT3G25150 374 / 8e-125 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.008G096700 [exp] 235 / 9e-72 AT2G03640 219 / 3e-66 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Potri.010G157800 [exp] 219 / 2e-65 AT1G13730 219 / 4e-66 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) Potri.002G257000 [exp] 182 / 8e-52 AT5G43960 402 / 3e-137 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.014G192900 [exp] 176 / 2e-49 AT5G43960 392 / 3e-133 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.010G065500 [exp] 169 / 7e-47 AT5G43960 310 / 3e-101 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.011G025500 [exp] 56 / 3e-09 AT1G11570 171 / 5e-56 NTF2-like (.1.2) Potri.003G170800 [exp] 52 / 5e-08 AT1G27970 230 / 1e-79 nuclear transport factor 2B (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025906 [exp] 281 / 2e-86 AT3G25150 363 / 4e-118 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10022765 [exp] 272 / 1e-85 AT3G25150 408 / 1e-138 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10003144 [exp] 268 / 9e-84 AT3G25150 385 / 2e-129 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10036918 [exp] 239 / 4e-73 AT2G03640 250 / 4e-78 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10037066 [exp] 237 / 5e-72 AT2G03640 248 / 2e-77 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10026668 [exp] 235 / 2e-71 AT2G03640 255 / 5e-80 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10004644 [exp] 234 / 4e-71 AT2G03640 253 / 2e-79 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10022873 [exp] 173 / 2e-48 AT5G43960 377 / 1e-127 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10023722 [exp] 139 / 2e-35 AT5G43960 266 / 2e-83 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10014469 [exp] 110 / 6e-26 AT5G43960 156 / 4e-43 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0051 [poplar] [flax] NTF2 PF02136 [poplar] [flax] NTF2 Nuclear transport factor 2 (NTF2) domain
Representative CDS sequence Show only first row Show all	>Potri.015G058700.3 pacid=42775229 polypeptide=Potri.015G058700.3.p locus=Potri.015G058700 ID=Potri.015G058700.3.v4.1 annot-version=v4.1 ATGGCAACGCAGGAAACAGCTCCTGCTTCTGGTCCCAGTGCTGAAGTTGTTGGCAATGCCTTCGTGGAGCAATACTATCACATTCTGCACGAATCACCGG AATTGGTACATAGATTTTATCAAGATTCAAGCTCGCTAAGCCGACCAAATACCGATGGTTTTATGACAACAGTTACTACCATGCAAGCAATCAATGACAA GATCCTTTCATTGAATTATAAAGATTACACAGCTGAGATAAAAACGGCAGATGCTCAAGAGTCGCATGAGAAAGGAGTGATTGTTCTTGTAACTGGGTGC TTAACTGGAAAGGATGACGTGAAAAAGAAATTCACACAAACATTCTTTCTTGCTCCTCAAGAAAAAGGGTACTTTGTATTGAATGATGTATTTAGGTTTG TTGGAGAGAACGAACCAATGCCAAACACTTCTGCTTTGGCTAATGGCATCGTTGAAAGTGCTCCACCTGCCTTGACAGCAGAATCAGGTTGGGATGATGT GGTAGAACCAGCAAAATCAGGTTGGGATGATGTGGTAGAACCAGCAAAATCAGGTTGGGATGATGTGGTAGAACCAGATCCCACTCAGGCTACTGATCAT CTTACGGTGGATCCTGCTACTTCCTTTGAAGAGGAAGATCTAAATAATGGTTCTGAAGTTTGTGATCATTCTGATAAGGAGGATGGTTCAGTGATTGACA TAGAGGTGGTTGAACCTGTAACTGATTCAACTCAGAATGAAATTCTTGCAACTATTAATGCAGCTCCTGCTTCCTTGGAGGATGCTCCAAAGATATCATA TGCTTCAATTTTAAAAGTGATGAAAGGTAATACACCTCATCCAGTCCATTTTTCTATGACTAAAATGAGAGCTGCACCAATAAGCATTGAACAACAGTCA GCTAACTCTGCAAAGTCAGCTGCACCAGAGGCTTTGGCTTCAGCTGGTAGCAGTGCTGGTGAAACTAGCGATGTTCATGAAGAAGCTGAAGGTCACTCTA TATTTGTTAAAAATTTACCTTTTGACGCAACGGTTGAACAGCTTGAAGAGGCATTTAAACATTTTGGGCCAATCAAGCATGGTGGCATTCAAGTCAGGAG TAGTAAGCAAGGATTCTGTTTTGGCTTTGTTGAATTTGAAACTATGAGTTCCATGCAGGGTGCTCTTGAGGCTTCACCTATCAATATCGGGGATCATCAA GCTATTGTTGAGGAAAAGAGAACAAACACCCGAGTTGGAAGCAGTAGTGGGAGGGGGAGGTATTCTTCAGGAAGAAGTGGGTTTCGGAGTGACAGTTTTA AGAGCCGTGGGAACTTTTTTGGTGGCCGGGGACATGGCAGGAATGAATTCAAAAACCAGGGTGAGTTTTCAGGGCGGCCTAGGGGTTCAACTGGATATGC TGGAGAGGATTATCAGCAAGGTTATCAGAGTGGAAGCAGAAGGGGAGGGCGTCAAGGTGGGACAAAAAGCAGTTCATTTTCTACATGA
AA sequence Show only first row Show all	>Potri.015G058700.3 pacid=42775229 polypeptide=Potri.015G058700.3.p locus=Potri.015G058700 ID=Potri.015G058700.3.v4.1 annot-version=v4.1 MATQETAPASGPSAEVVGNAFVEQYYHILHESPELVHRFYQDSSSLSRPNTDGFMTTVTTMQAINDKILSLNYKDYTAEIKTADAQESHEKGVIVLVTGC LTGKDDVKKKFTQTFFLAPQEKGYFVLNDVFRFVGENEPMPNTSALANGIVESAPPALTAESGWDDVVEPAKSGWDDVVEPAKSGWDDVVEPDPTQATDH LTVDPATSFEEEDLNNGSEVCDHSDKEDGSVIDIEVVEPVTDSTQNEILATINAAPASLEDAPKISYASILKVMKGNTPHPVHFSMTKMRAAPISIEQQS ANSAKSAAPEALASAGSSAGETSDVHEEAEGHSIFVKNLPFDATVEQLEEAFKHFGPIKHGGIQVRSSKQGFCFGFVEFETMSSMQGALEASPINIGDHQ AIVEEKRTNTRVGSSSGRGRYSSGRSGFRSDSFKSRGNFFGGRGHGRNEFKNQGEFSGRPRGSTGYAGEDYQQGYQSGSRRGGRQGGTKSSSFST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60980			Nuclear transport factor 2 (NT...		Potri.015G058700 [exp]	0	1
AT4G31480			Coatomer, beta subunit (.1.2)		Potri.018G007400 [exp]	5.38	0.9368
AT5G11980			conserved oligomeric Golgi com...		Potri.006G225500 [exp]	8.36	0.9297
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Potri.011G103700 [exp]	9.05	0.8841
AT1G67930			Golgi transport complex protei...		Potri.002G058300 [exp]	11.74	0.8814
AT4G23690			Disease resistance-responsive ...		Potri.001G097001 [exp]	13.85	0.9126
					Potri.009G092300 [exp]	14.14	0.9169	AGP9.1
AT1G60070			Adaptor protein complex AP-1, ...		Potri.006G092800 [exp]	15.00	0.9046
AT1G30630			Coatomer epsilon subunit (.1)		Potri.011G155800 [exp]	16.52	0.9178	COPE2.1
AT5G18520			Lung seven transmembrane recep...		Potri.016G081300 [exp]	20.14	0.9122
AT5G10840			Endomembrane protein 70 protei...		Potri.006G264500 [exp]	20.37	0.9167

Compare expression of checked genes

Potri.015G058700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.