Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60970 176 / 1e-51 TCP TCP5 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1) AT5G08070 156 / 1e-45 TCP TCP17 TCP domain protein 17 (.1) AT3G02150 145 / 9e-41 TCP TFPD, PTF1, TCP13 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2) AT1G30210 110 / 4e-27 TCP ATTCP24, TCP24 TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 (.1.2) AT4G18390 108 / 3e-26 TCP TCP2 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) AT1G53230 100 / 3e-23 TCP TCP3 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 (.1) AT3G15030 96 / 1e-21 TCP TCP4, MEE35 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) AT2G31070 89 / 2e-19 TCP TCP10 TCP domain protein 10 (.1) AT1G67260 75 / 9e-15 TCP TCP1 TCP family transcription factor (.1.2) AT1G68800 74 / 3e-14 TCP TCP12, BRC2, TCP18 BRANCHED 2, TCP domain protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G116100 [exp] 196 / 4e-59 AT3G02150 173 / 1e-50 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2) Potri.017G094800 [exp] 193 / 3e-58 AT3G02150 161 / 4e-47 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2) Potri.004G065800 [exp] 114 / 8e-28 AT4G18390 151 / 2e-41 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Potri.011G083100 [exp] 110 / 1e-26 AT4G18390 150 / 5e-41 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Potri.013G119400 [exp] 96 / 4e-22 AT3G15030 243 / 4e-77 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.001G375800 [exp] 96 / 2e-21 AT1G53230 279 / 1e-90 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 (.1) Potri.019G091300 [exp] 94 / 3e-21 AT3G15030 227 / 5e-71 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.011G096600 [exp] 93 / 8e-21 AT3G15030 262 / 7e-84 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.017G112000 [exp] 73 / 5e-14 AT1G67260 111 / 1e-27 TCP family transcription factor (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017856 [exp] 174 / 2e-51 AT5G60970 175 / 6e-52 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1) Lus10034679 [exp] 169 / 3e-49 AT5G60970 169 / 2e-49 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1) Lus10032984 [exp] 125 / 6e-33 AT3G02150 142 / 3e-40 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2) Lus10038512 [exp] 112 / 8e-27 AT4G18390 204 / 1e-60 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Lus10023297 [exp] 109 / 4e-26 AT4G18390 207 / 8e-63 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Lus10000463 [exp] 94 / 5e-21 AT3G15030 224 / 1e-69 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Lus10003078 [exp] 76 / 4e-15 AT1G67260 105 / 2e-25 TCP family transcription factor (.1.2) Lus10035055 [exp] 72 / 4e-14 AT1G68800 102 / 7e-25 BRANCHED 2, TCP domain protein 12 (.1) Lus10034072 [exp] 73 / 5e-14 AT1G67260 100 / 4e-23 TCP family transcription factor (.1.2) Lus10021713 [exp] 72 / 7e-14 AT3G18550 107 / 2e-26 BRANCHED 1, TCP family transcription factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03634 [poplar] [flax] TCP TCP family transcription factor
Representative CDS sequence Show only first row Show all	>Potri.015G058800.1 pacid=42776482 polypeptide=Potri.015G058800.1.p locus=Potri.015G058800 ID=Potri.015G058800.1.v4.1 annot-version=v4.1 ATGATTTCAAATTCAAGAGTTATGGATTTGCAAGGAAAACAAGCAGGTGGCGGCGGCAGTGAGGGCGACAAGATTTCCAAGGCAACACCATCCACTTCAT CAAGACAATGGTCAGCATTTAGAAATCCAAGGATTGTTCGCGTCTCCCGGTCTTTTGGAGGAAAAGATAGGCATAGCAAGGTTTGCACAGTGAGGGGACT GAGGGACCGGCGAATTAGGCTTTCTGTACCCACAGCCATTCAGTTATATGATCTTCAAGATAGGCTTGGCCTTAGTCAGCCTAGCAAGGTAATAGATTGG TTGCTTGATGCTACTAAAAATGATATCGATAAGTTGCCTCCACTTCAGATGCCTCCAGGGTTTGGTCAATTCCACCAGCCAATGCTATTTTCTCATCAAT CAAATATTGCATCTCCCTTCTTTGATCCCAATTCTACGTTTATCAAGGACGTAGGATTTCATTCATTAGGGATAAAGATCGGTACCAGTACTGCTGGTCT TGATGGGCAGGTGCAAAACAGTAGTAATACTATGCCAAAATCAAGCTATAGCAGGGATATAGAAGCTTCAATAAGAGCAAAAAGCAAGCAAGTTGACACT ATTAATGAGAAAGGAAAGTGGATCAAAACAAATGAAGATGGAGAAATTGGAAGTTACAGTACTACTGGACAGGTCCCCGCTCAAAATTTCTTTCCTTTAG CCAATCATTCTTCCTTACCAAGCTTGCTATACAATCCTACTGTGCCCTTCAACTCCAATCATTGGGATGCTTCAAATTTATCTCTATCTACACAATTTGG AGGCCATGGATTTCTCTCCCAAACAGAAAATTCCTTGGACACCCCATCATCACTGCCTCTCTCTTCTGGCTCTCAATTATTTTTCTGCCCACCTCCACCA ATGCCACCACTCTTTCCATCCTATCCTCCTTGTGTTACCACTCCCTCAGAGAATGAGTCCAGAGATATGAACCATTTCCAATTATTGAGCTCAAGTTCGT CACAGCATATCTTACCGATTTCCCTGACAATGAGCTCAACAACAAAACCTTTTTCCTTGAATCTAAATCCTGGGCTTCTTCGTTCGCAAAATAATAACGA AAGCAATCCTGATGAAGATACTACAGAATCATAA
AA sequence Show only first row Show all	>Potri.015G058800.1 pacid=42776482 polypeptide=Potri.015G058800.1.p locus=Potri.015G058800 ID=Potri.015G058800.1.v4.1 annot-version=v4.1 MISNSRVMDLQGKQAGGGGSEGDKISKATPSTSSRQWSAFRNPRIVRVSRSFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDW LLDATKNDIDKLPPLQMPPGFGQFHQPMLFSHQSNIASPFFDPNSTFIKDVGFHSLGIKIGTSTAGLDGQVQNSSNTMPKSSYSRDIEASIRAKSKQVDT INEKGKWIKTNEDGEIGSYSTTGQVPAQNFFPLANHSSLPSLLYNPTVPFNSNHWDASNLSLSTQFGGHGFLSQTENSLDTPSSLPLSSGSQLFFCPPPP MPPLFPSYPPCVTTPSENESRDMNHFQLLSSSSSQHILPISLTMSSTTKPFSLNLNPGLLRSQNNNESNPDEDTTES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60970	TCP	TCP5	TEOSINTE BRANCHED 1, cycloidea...		Potri.015G058800 [exp]	0	1
AT1G29720			Leucine-rich repeat transmembr...		Potri.011G072941 [exp]	3.16	0.8543
AT1G26320			Zinc-binding dehydrogenase fam...		Potri.007G143800 [exp]	5.47	0.8322
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Potri.015G060400 [exp]	7.74	0.8195
AT2G36290			alpha/beta-Hydrolases superfam...		Potri.008G021400 [exp]	8.66	0.8370
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.017G052000 [exp]	8.77	0.8575
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.006G074800 [exp]	12.80	0.8024
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073016 [exp]	15.74	0.8300
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Potri.008G115800 [exp]	15.90	0.8124
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.018G141700 [exp]	16.15	0.8296
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Potri.002G102900 [exp]	23.66	0.8313

Compare expression of checked genes

Potri.015G058800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.