Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26190 250 / 1e-73 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G29760 160 / 6e-44 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G36540 149 / 9e-42 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G36550 117 / 4e-31 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G116400 [exp] 294 / 1e-91 AT4G26190 235 / 4e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G244200 [exp] 228 / 5e-72 AT2G36540 190 / 4e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G244400 [exp] 204 / 1e-62 AT2G36540 169 / 1e-51 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034676 [exp] 306 / 1e-96 AT4G26190 225 / 3e-62 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10017858 [exp] 299 / 8e-94 AT4G26190 224 / 8e-62 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10021147 [exp] 289 / 1e-87 AT4G26190 241 / 2e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10007989 [exp] 283 / 5e-85 AT4G26190 247 / 3e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10032890 [exp] 244 / 1e-77 AT4G26190 214 / 7e-63 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10019759 [exp] 170 / 2e-49 AT2G36540 174 / 1e-53 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10027135 [exp] 140 / 1e-38 AT3G29760 134 / 5e-36 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10016365 [exp] 88 / 7e-20 AT2G36540 87 / 1e-20 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10019760 [exp] 77 / 9e-16 AT2G36540 93 / 7e-23 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF03031 [poplar] [flax] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Potri.015G059000.4 pacid=42776534 polypeptide=Potri.015G059000.4.p locus=Potri.015G059000 ID=Potri.015G059000.4.v4.1 annot-version=v4.1 ATGGCGCTCGATCATGATTCTGCTGAGGGAGATCATTTGGTGAATGTAGAGAGAGATAAATGCCTAGAGGATACAATCAACAACAATGCTTCTGAAGCAG TTTTCTCCGAGCAAGAGGGGGCGCTTCCGATTAAGAACATTGCTTTGCATTCAGTTCTCACAAAGGCCATATTGAAATATTCAAGAAAGAAGAGGAAGAG GGCTAAGAAAACTTCATCCTTACTTAAAGATACATCAATCGTAAATAATACTGTTCATTCAGTTCTCACAAAGCGCAAATGTAATGTACTACTGAAATAT TCAAGAAATAGGAGAAAGAAAAGTTCATCCTTTGTATATCACAGGAAGATGATAGATTCACATGATTCCTCACAACATTGTGTGGAACCCATGGTGGTGG CAAGTCAAACTTCGTTGGATCAGTCAAATGAAGTTCGCTCCGTCCATGTCATGGAAAATAACGTAGAAAGAGTACAAGTTGTTGAGCATGCTGCACCAGT GCAGGTTGCGGCAAATGTTTTGGTTGAGATGTCCTCTGACTGTTCACCGGGTGACTTTGCATGTGAGGAAAGTAAGATCACTGAGATAAGGAACAGTGTT GGTGTGGAAGCTTCTGTCAAGGAGGTGAAGATTCCACAAGCCTGTGCACTGGAACGACCTCACACTGGACGTGTCACTAAAAAGCTCCTTATCCTTGATG TTAATGGACTTCTAGCTGATATTGTTTCATATGTTTCTGCTGGATATCAGGCTAACATAGTAGTCTCTGGGAAGTCAGTTTTCAAAAGGCCCTTCTGTGA TGATTTTCTGAGGTTTTGCTTTGAGAAATTTGATGTTGGTGTTTGGTCATCAAGAACCAAGAGAAATGTGAACCCGCTGATTGAGTTTCTCTTTGGTGAT TCAAGGCATAAGTTGCTCTTCTGCTGGGATCAATCTCACTGCACTGATACAGGATTCACCACAGTCGAGAATAGGAGCAAACCCCTGTTTTTGAAGGAAC TAAAAAAAATATGGGAGTATCTTGAGTCTACTCTTCAATTGAATAAAGGAGAATATGATGAATCAAATACGTTATTGTTGGATGATTCACCATACAAGGC TCTATGCAATCCAGTGCACACTGCTATATTTCCTCCTTCATATGGGTACAGGGACTTAGCAGATTCTTCATTAGGACCAGAAGGTGATCTTCGGGTATAT CTGGAGCGATTAGCTGAGGCTGAAAACGTCCAAGAATATGTTGCACAACATCCATTTGGTCAACGAGCTATTACAGAATCGGATCCGTCCTGGGGTTTCT ATAGCAGGATTGCAAGTGCCGACTCATGTCAATCCCAGAATGTTGCCAGCACCTCCGTCACTTGTCAGCCATGA
AA sequence Show only first row Show all	>Potri.015G059000.4 pacid=42776534 polypeptide=Potri.015G059000.4.p locus=Potri.015G059000 ID=Potri.015G059000.4.v4.1 annot-version=v4.1 MALDHDSAEGDHLVNVERDKCLEDTINNNASEAVFSEQEGALPIKNIALHSVLTKAILKYSRKKRKRAKKTSSLLKDTSIVNNTVHSVLTKRKCNVLLKY SRNRRKKSSSFVYHRKMIDSHDSSQHCVEPMVVASQTSLDQSNEVRSVHVMENNVERVQVVEHAAPVQVAANVLVEMSSDCSPGDFACEESKITEIRNSV GVEASVKEVKIPQACALERPHTGRVTKKLLILDVNGLLADIVSYVSAGYQANIVVSGKSVFKRPFCDDFLRFCFEKFDVGVWSSRTKRNVNPLIEFLFGD SRHKLLFCWDQSHCTDTGFTTVENRSKPLFLKELKKIWEYLESTLQLNKGEYDESNTLLLDDSPYKALCNPVHTAIFPPSYGYRDLADSSLGPEGDLRVY LERLAEAENVQEYVAQHPFGQRAITESDPSWGFYSRIASADSCQSQNVASTSVTCQP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26190			Haloacid dehalogenase-like hyd...		Potri.015G059000 [exp]	0	1
					Potri.001G014050 [exp]	2.44	0.7168
AT5G26610			D111/G-patch domain-containing...		Potri.013G002100 [exp]	5.19	0.6728
AT3G04460		PEX12, ATPEX12,...	ABERRANT PEROXISOME MORPHOLOGY...		Potri.013G047800 [exp]	9.89	0.7141
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Potri.018G046200 [exp]	10.95	0.6558
AT2G26800			Aldolase superfamily protein (...		Potri.006G036800 [exp]	11.31	0.6164
AT1G01020		ARV1	Arv1-like protein (.1.2)		Potri.002G181700 [exp]	17.20	0.6723
AT3G08650			ZIP metal ion transporter fami...		Potri.016G140500 [exp]	20.19	0.5841
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Potri.011G124700 [exp]	21.02	0.5988
AT3G30841			Cofactor-independent phosphogl...		Potri.004G106200 [exp]	23.97	0.6025
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.008G191051 [exp]	26.94	0.6450

Compare expression of checked genes

Potri.015G059000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.