Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26355 99 / 1e-27 SP1L1 SPIRAL1-like1 (.1) AT2G03680 87 / 6e-23 SKU6, SPR1 spiral1 (.1.2) AT1G69230 86 / 1e-22 SP1L2 SPIRAL1-like2 (.1.2) AT3G02180 83 / 2e-21 SP1L3 SPIRAL1-like3 (.1.2.3) AT5G15600 77 / 5e-19 SP1L4 SPIRAL1-like4 (.1) AT4G23496 62 / 2e-13 SP1L5 SPIRAL1-like5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G097000 [exp] 89 / 9e-24 AT1G26355 127 / 2e-39 SPIRAL1-like1 (.1) Potri.017G095200 [exp] 87 / 2e-23 AT1G69230 94 / 2e-26 SPIRAL1-like2 (.1.2) Potri.010G157600 [exp] 82 / 2e-21 AT1G26355 120 / 1e-36 SPIRAL1-like1 (.1) Potri.003G131600 [exp] 63 / 4e-14 AT4G23496 81 / 4e-21 SPIRAL1-like5 (.1) Potri.001G100100 [exp] 63 / 8e-14 AT4G23496 81 / 2e-21 SPIRAL1-like5 (.1) Potri.T124504 [exp] 49 / 2e-07 AT1G19270 182 / 3e-53 DA1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034675 [exp] 90 / 4e-24 AT1G26355 127 / 5e-39 SPIRAL1-like1 (.1) Lus10037069 [exp] 87 / 3e-23 AT1G26355 147 / 2e-47 SPIRAL1-like1 (.1) Lus10000046 [exp] 87 / 3e-23 AT1G26355 146 / 7e-47 SPIRAL1-like1 (.1) Lus10036916 [exp] 87 / 3e-23 AT1G26355 146 / 7e-47 SPIRAL1-like1 (.1) Lus10026672 [exp] 86 / 1e-22 AT1G26355 149 / 4e-48 SPIRAL1-like1 (.1) Lus10026670 [exp] 86 / 2e-22 AT1G26355 150 / 1e-48 SPIRAL1-like1 (.1) Lus10004642 [exp] 84 / 5e-22 AT1G26355 147 / 2e-47 SPIRAL1-like1 (.1) Lus10032988 [exp] 77 / 8e-19 AT1G69230 99 / 8e-28 SPIRAL1-like2 (.1.2) Lus10032297 [exp] 63 / 9e-14 AT1G69230 98 / 7e-28 SPIRAL1-like2 (.1.2) Lus10024667 [exp] 59 / 2e-12 AT4G23496 74 / 2e-19 SPIRAL1-like5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G059100.2 pacid=42775743 polypeptide=Potri.015G059100.2.p locus=Potri.015G059100 ID=Potri.015G059100.2.v4.1 annot-version=v4.1 ATGGGACGTGGAGTGAGCAGCGGCGGAGGACAGAGTTCTTTGGGCTACCTTTTTGGAGGTGGAGAGGCTCCTGCTCCTCCAGTTCCAAAGCCCACCAATA CCAATGCTGAGACTCCTCAGAGCAGCCGCCTCCCTGTAGCCAATGAGCCTGCAGAGGTCAGCAAGCAGATTCCAGCTGGTGTTCCTGCAAAACCCAACAC CACTAATAACTATTTCCGTGCTGATGGGCAGAACTGTGGCAACTTTCTCACGGACCGCCCAACAACAAAGGTGCATGCAGCTCCTGGCGGTGGATCTTCA CTGGACTTCCTGTTTGGTGGTGGTGGTGCTGGTGCTGGTGCTGGTGCCGGTGCTGGTGGTGCTGGTGGTGGGAAATGA
AA sequence Show only first row Show all	>Potri.015G059100.2 pacid=42775743 polypeptide=Potri.015G059100.2.p locus=Potri.015G059100 ID=Potri.015G059100.2.v4.1 annot-version=v4.1 MGRGVSSGGGQSSLGYLFGGGEAPAPPVPKPTNTNAETPQSSRLPVANEPAEVSKQIPAGVPAKPNTTNNYFRADGQNCGNFLTDRPTTKVHAAPGGGSS LDFLFGGGGAGAGAGAGAGGAGGGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Potri.015G059100 [exp]	0	1
AT5G56580		ANQ1, ATMKK6	ARABIDOPSIS THALIANA MAP KINAS...		Potri.018G068500 [exp]	2.64	0.9135	Pt-MKK6.1
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Potri.001G392200 [exp]	3.16	0.9071	Pt-GF14.4
AT4G29360			O-Glycosyl hydrolases family 1...		Potri.002G007300 [exp]	3.46	0.9072
AT1G01200		ATRAB-A3, AtRAB...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.014G102200 [exp]	5.29	0.9053
AT4G39860			unknown protein		Potri.007G092400 [exp]	6.00	0.8843
AT5G20500			Glutaredoxin family protein (....		Potri.018G133400 [exp]	6.00	0.9095
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Potri.002G061900 [exp]	8.60	0.9107	KDSA.1
AT3G52940		ELL1, HYD2, FK	FACKEL, EXTRA-LONG-LIFESPAN 1,...		Potri.006G116200 [exp]	10.00	0.8785
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Potri.002G093100 [exp]	12.00	0.9056	Pt-SAH7.1
AT5G18800			Cox19-like CHCH family protein...		Potri.008G196600 [exp]	14.83	0.8935

Compare expression of checked genes

Potri.015G059100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.