Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18610 621 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74150 563 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G05420 119 / 4e-28 ACBP4 acyl-CoA binding protein 4 (.1.2) AT2G36360 117 / 6e-28 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT5G27630 115 / 6e-27 ACBP5 acyl-CoA binding protein 5 (.1) AT5G18590 115 / 8e-27 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G04420 111 / 6e-26 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT3G07720 107 / 2e-25 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G48180 100 / 6e-23 NSP5 nitrile specifier protein 5 (.1) AT4G04670 100 / 1e-21 Met-10+ like family protein / kelch repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G062100 [exp] 959 / 0 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G013000 [exp] 191 / 7e-53 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G008200 [exp] 186 / 5e-51 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.008G024700 [exp] 119 / 2e-28 AT2G36360 639 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) Potri.008G031200 [exp] 117 / 9e-28 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.008G214900 [exp] 117 / 3e-27 AT5G18590 819 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.014G168300 [exp] 110 / 1e-26 AT3G07720 484 / 1e-173 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G026900 [exp] 113 / 4e-26 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.013G018800 [exp] 112 / 9e-26 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017860 [exp] 444 / 4e-151 AT1G18610 478 / 1e-164 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10031420 [exp] 159 / 1e-41 AT1G74150 179 / 3e-49 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10010913 [exp] 157 / 5e-41 AT1G18610 177 / 1e-48 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10031497 [exp] 118 / 8e-28 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10028825 [exp] 115 / 4e-27 AT5G04420 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10029902 [exp] 115 / 8e-27 AT3G05420 1040 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10002756 [exp] 114 / 4e-26 AT4G04670 1205 / 0.0 Met-10+ like family protein / kelch repeat-containing protein (.1) Lus10015176 [exp] 112 / 1e-25 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10037933 [exp] 110 / 2e-25 AT5G04420 648 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10043424 [exp] 108 / 5e-25 AT2G36360 625 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF07646 [poplar] [flax] Kelch_2 Kelch motif CL0186 [poplar] [flax] Beta_propeller PF13418 [poplar] [flax] Kelch_4 Galactose oxidase, central domain
Representative CDS sequence Show only first row Show all	>Potri.015G059400.1 pacid=42774835 polypeptide=Potri.015G059400.1.p locus=Potri.015G059400 ID=Potri.015G059400.1.v4.1 annot-version=v4.1 ATGAGATGGGAAAGGGTGCTGCAGCAGCAGCAGCAGCAAGGAGTTCAAATAGAAGAGTTAAATGGGCCAGGGAAGAGGTGGGGACACACTTGTAATTCAA TTAAAGGAGGAAGATTTCTATATGTTTTTGGTGGCTATGGCAAAGATAACTGCCAGACCAACCAAGTTCATGTCTTTGATACCGTTAACCAGACCTGGAG CCAGCCAGTGTTAAATGGCACGCCACCAGTTCCGAGAGATAGCCACACTTGTACAACTGTTGGTGACAATCTGTATGTGTTTGGAGGTACTGATGGGAAG AACCCTCTCAATGATCTGCATATCTTAGATACTTCATCTCATACTTGGATAACTCCAAATGTGAGAGGTGATGGGCCAGAGGCACGGGAGGGTCATGGTG CTGCCCTAGTTGGCAAACGACTTTTTATATATGGTGGATGTGGGAAATCTTCAGATAATTATCACGAAGTCTATTATGAGGATCTTTACATCTTGAATAC AGAGACTTTTGTATGGAAACAAGCAATAACAACAGGCACTCCACCTTCTGCCCGTGATAGCCATACTTGCTCATCTTGGAGGGACAAAATCATTGTGATT GGTGGTGAAGATGGGCATGATTATTATTTGTCAGATGTCCACATCCTAGATACAGAAACTCTTGTTTGGAAGGAGCTGAACACATTGGGTCAGAAGTTGC CACCTCGAGCTGGTCATTCCACTGTTGCTTTTGGCAAGAATTTATTTGTTTTTGGTGGATTTACAGATGCCCAAAATCTATATGATGATTTTTATATGCT TGATGTTGAAACTGGTGTTTGGACTAAGGTGATGACAACTGGAGATGGACCTTCTGCAAGATTCTCTGTGGCTGGGGACTGCTTGGATCCACTGAAGGGT GGTGTGCTTGTCTTCATTGGTGGCTGCAATAAGAGTCTTGAGGCGCTGGAAGACATGTACTACTTACACACAGGACATACAAGAGTGCAAGATGAATGGC GTCTAGAAAAGTTATCTCTGAAGAAGCAATTGAAACTAAAATGCCAAGAACAAAATCTTAATTCTTCTGTGCGTGATAAAGTTTTAGTCCAAATTGACAC AAATGCTGACATTCACCACACCTTGCCGAGTTATGCCCAACCAGGCAGAGAAAATTTCCCATTGAATCAAAGACAACTTCATCAAGGGAAGAAGTCATTT CAAGCCAAAGTTACTGAAAGCCTTCCACATGGATATACCATCGAGACCACTGTAGATGGAAAGCCTCTACGTGGAATATTATTTTCCAACAAGCCAAGTT CTCCCCAGATAGTTAACCACAATAACAGCAGGAAAAGGGCAAGTGCAGAAATTGGTGTGGTATTGAATGGTGACTACAACAGCAAACCAAAAACTTCTAA AAACCTCAAGCAGGATGCAGTAGAAAACATGCAGCCAGACAATGCTCATGAGAAGGAGTCCACAGCACAGGAACCCAAGACAGAAGCTTCTGCTGTCCCT GATTTGAAGAATCTGGCTTCTTCTAATGATCATCAGTCCCATGAGGCTCCTCAAAATGCAGAACCACCAGTGGTCCCTACCCTGAATTTGAATGATGATA TGATCTCTGATGCACCAAACTCTGATACAGAATTTTCAAAAGAGAAGTGTACCCCGGGAGAGGACTCTACGACTTGGTTGCTAAACCAAGATGGCCAGAC AGACACCAAGTGCTGA
AA sequence Show only first row Show all	>Potri.015G059400.1 pacid=42774835 polypeptide=Potri.015G059400.1.p locus=Potri.015G059400 ID=Potri.015G059400.1.v4.1 annot-version=v4.1 MRWERVLQQQQQQGVQIEELNGPGKRWGHTCNSIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVLNGTPPVPRDSHTCTTVGDNLYVFGGTDGK NPLNDLHILDTSSHTWITPNVRGDGPEAREGHGAALVGKRLFIYGGCGKSSDNYHEVYYEDLYILNTETFVWKQAITTGTPPSARDSHTCSSWRDKIIVI GGEDGHDYYLSDVHILDTETLVWKELNTLGQKLPPRAGHSTVAFGKNLFVFGGFTDAQNLYDDFYMLDVETGVWTKVMTTGDGPSARFSVAGDCLDPLKG GVLVFIGGCNKSLEALEDMYYLHTGHTRVQDEWRLEKLSLKKQLKLKCQEQNLNSSVRDKVLVQIDTNADIHHTLPSYAQPGRENFPLNQRQLHQGKKSF QAKVTESLPHGYTIETTVDGKPLRGILFSNKPSSPQIVNHNNSRKRASAEIGVVLNGDYNSKPKTSKNLKQDAVENMQPDNAHEKESTAQEPKTEASAVP DLKNLASSNDHQSHEAPQNAEPPVVPTLNLNDDMISDAPNSDTEFSKEKCTPGEDSTTWLLNQDGQTDTKC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18610			Galactose oxidase/kelch repeat...		Potri.015G059400 [exp]	0	1
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Potri.006G248100 [exp]	1.41	0.8811	LUG.1
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.005G117900 [exp]	3.00	0.8667
AT1G80150			Tetratricopeptide repeat (TPR)...		Potri.001G171300 [exp]	4.47	0.8797
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Potri.018G107000 [exp]	5.47	0.8390
AT3G19740			P-loop containing nucleoside t...		Potri.005G093300 [exp]	13.22	0.8458
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Potri.012G099600 [exp]	14.83	0.8373
AT1G72040			P-loop containing nucleoside t...		Potri.019G081600 [exp]	15.74	0.8413
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Potri.003G204900 [exp]	16.70	0.8401
AT5G55600			agenet domain-containing prote...		Potri.016G007500 [exp]	16.97	0.8368
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Potri.008G105200 [exp]	17.32	0.8277	Pt-PHYB.1

Compare expression of checked genes

Potri.015G059400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.