Plant FIBer expression Database

Potri.015G059501 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G227300
[exp]
97 / 1e-24 AT1G18600 324 / 3e-110 ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12, RHOMBOID-like protein 12 (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.015G059501.1 pacid=42774964 polypeptide=Potri.015G059501.1.p locus=Potri.015G059501 ID=Potri.015G059501.1.v4.1 annot-version=v4.1
ATGGTAATTGGAAGATTAATGTCAGTTTTTGGGTGTTATTTTTCAATTTTAAAGCGAGGAATTGCCCTTGATTACAAAACCATCTCAAGAAAAAACCCAG
AAGAAGAAGAAGAGAGGAAGAAAGCATCAAAAAGGAAATGCAGAGACTCCTTTCTCTTAGAAATGCCTCATCAAACCTCCCCAAAAAGCTCCCAAACAAC
TCTTCACTTCTCCCATCTCAACCCTATAAAACCTTCACAAAACCAACCCACCATTACCAAAACCAGAATTTTTCACCCAAAATTATTCATGGGCTTCTCT
CGAAGCAGTTTTTGTCCATTTTATCAAACACCCATTTCAGGGTTTCAACCAAAAGTCTCACAGAATGCAAAGTTGGCTTCTTTATACGTCGGTTTGAGAG
AGGTAGCCTTGGCTGGTAATTTGTTAATTCTTTGA
AA sequence
>Potri.015G059501.1 pacid=42774964 polypeptide=Potri.015G059501.1.p locus=Potri.015G059501 ID=Potri.015G059501.1.v4.1 annot-version=v4.1
MVIGRLMSVFGCYFSILKRGIALDYKTISRKNPEEEEERKKASKRKCRDSFLLEMPHQTSPKSSQTTLHFSHLNPIKPSQNQPTITKTRIFHPKLFMGFS
RSSFCPFYQTPISGFQPKVSQNAKLASLYVGLREVALAGNLLIL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.015G059501
[exp]
0 1
Potri.012G083900
[exp]
2.00 0.6082
AT5G16320 FRL1 FRIGIDA like 1 (.1) Potri.002G206200
[exp]
3.16 0.6470 Pt-FRL1.1
AT5G63920 TOP3A, AtTOP3al... topoisomerase 3alpha (.1) Potri.005G067100
[exp]
4.69 0.6686
AT4G31805 WRKY family transcription fact... Potri.006G263800
[exp]
15.00 0.6414
AT2G15530 RING/U-box superfamily protein... Potri.005G055667
[exp]
50.89 0.5907
AT4G33990 EMB2758 embryo defective 2758, Tetratr... Potri.012G111900
[exp]
54.77 0.5821
AT5G57100 Nucleotide/sugar transporter f... Potri.018G139500
[exp]
73.41 0.5699
AT2G27410 B3 Domain of unknown function (DU... Potri.013G031600
[exp]
79.87 0.4999
ATCG00350 ATCG00350.1, PS... Photosystem I, PsaA/PsaB prote... Potri.007G062582
[exp]
116.40 0.5484
AT4G34760 SAUR-like auxin-responsive pro... Potri.007G012800
[exp]
164.24 0.5289 SAUR28

Potri.015G059501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.