Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39040 874 / 0 AtALS1, ABCB27, ALS1, ATTAP2 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) AT1G70610 357 / 5e-114 ABCB26, ATTAP1 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) AT3G62150 358 / 1e-109 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT2G47000 356 / 7e-109 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT3G28860 349 / 2e-106 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT3G28390 345 / 5e-105 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT4G01830 342 / 6e-104 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1) AT1G02520 342 / 1e-103 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT3G28380 342 / 1e-103 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT4G18050 336 / 7e-102 ABCB9, PGP9 ATP-binding cassette B9, P-glycoprotein 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G059800 [exp] 1166 / 0 AT5G39040 887 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059700 [exp] 1133 / 0 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.017G097200 [exp] 928 / 0 AT5G39040 892 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.018G051800 [exp] 791 / 0 AT5G39040 627 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.010G045900 [exp] 351 / 2e-111 AT1G70610 1033 / 0.0 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) Potri.010G003000 [exp] 361 / 1e-110 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.017G081100 [exp] 355 / 2e-108 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.014G113500 [exp] 347 / 2e-105 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187400 [exp] 346 / 3e-105 AT3G62150 1702 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021145 [exp] 972 / 0 AT5G39040 868 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Lus10007987 [exp] 961 / 0 AT5G39040 875 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Lus10038050 [exp] 355 / 9e-109 AT2G47000 1697 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10009989 [exp] 355 / 3e-108 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10004520 [exp] 342 / 8e-107 AT2G47000 1145 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10009988 [exp] 350 / 1e-106 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10038049 [exp] 350 / 2e-106 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10010012 [exp] 348 / 2e-106 AT1G02520 1526 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10005249 [exp] 348 / 4e-106 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10030674 [exp] 347 / 1e-105 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0241 [poplar] [flax] ABC_membrane PF00664 [poplar] [flax] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.015G059600.1 pacid=42775827 polypeptide=Potri.015G059600.1.p locus=Potri.015G059600 ID=Potri.015G059600.1.v4.1 annot-version=v4.1 ATGGACAGGTTTGGAGGAGTGAATGGTGGTGGTGGTGGTGAAAGAACACCTCTTCTTGGTCAAGGAGGAGGAAGAAAGGGGAATAATAATAATGCATCTG AAAACAATCAGTTCCCAGACCTTGAGCATGGAGATGCAGTGCCAGCTGCAAATGTGGGATTTGGTCGGGTATTTTCACTTGCAAAGCCTGATGCAGGAAA GCTGATAATTGCTACGCTAGCTCTCCTGATTGCATCCACATCAAATATACTGATTCCTAAATTTGGTGGGAAGATAATAGATATTGTGTCAGGAGATATA GAAACACCTGAACAGAAAGCTGAAGGTTTACGTGCTGTCAACAGCACCATACTACAAATCTTTCTCGTTGTCGTAGTTGGTTCGGTTTGCACAGCACTCG GAGCATGGTTGATGTCTTCCACTAGTGAAAGGGTTGTTGCTCGGTTGAGAAAGAATTTATTTAATCACCTTATTAACCAGGAGATAGCCTTCTTTGATGT GACTAGAACAGGAGAGCTACTGAGCAGGTTTTCTGAAGATACACAGATCATAAAAAATGCTGCAACCTCAAATCTTTCTGAGGCCCTAAGAAATGTATCA ACAGCACTTATTGGTCTTGGCTTCATGCTTGCGACATCGTGGAAGTTAACTTTGTTGGCTTTGGTGGTTGTGCCGGCTATTTCTGTTGCCGTGAATCAAT TTGGCCGCTTCCTTCGTGAAATTTCTCACAAGACTCAAGCTGCAGCTGCTGCTGCTGCTTCAATTGCTGAGGAATCTTTCGGCGCTATACGAACAGTCAG ATCTTTTGCACAAGAAGGTTATGAGAGTTCACGTTATTCTGAGAAAGTTGATGAGACATTGAAGCTTGGACTTAAACAAGCTAAACTGGTTGGGTTCTTC TTTGGAGGTCTGAATGCTGCATCAACCCTTTCAGTGATCATAGTAGTGATATATGGAGCTAACTTGACAATCACAGGATCTATGACCACTGGTGCTCTTA CATCCTTCATTCTCTACAGCCTCACAGTTGGTGGCTCCATATCCGGCTTGTCAGGATTATACACCGTAGCAATGAAAGCCGCGGGAGCCAGCAGGAGGGT TTTCCAGCTTCTAGATCGTGTTTCTTCCATGCCGAAGTCAGGAAATAAGTGTCCTTTAAGTGAACAAGTTGGTGATGTGGAATTAGATGATGTATGGTTT GCCTATCCATCTCGTCCAAACGATATGGTTCTCCGGGGAATAACATTGAAACTGCAGCCTGGCTCAAAAGTTGCTCTTGTTGGCCCGAGTGGTGGAGGAA AAACCACAATAGCAAACTTGATTGAAAGGTTTTATGATCCAATCAAGGGAAAGGTTCTCTTAAATGGAGTTCCTCTAGTAGAAATATCACATGAACATCT ACACAGGAAGATCAGTATAGTGAGCCAGGAGCCTGTTCTTTTCAACTGCTCTATAGAGCAGAATATAGCCTATGGGTGTGAGGGTAAAGTCAGTAGCATG GATATAGAAAACGCAGCGAAAATGGCCAATGCACATGATTTCATATCAAAATTCCCAGATAAATATCAAACTTTTGTAGGAGAACGTGGGCTAAGACTTT CAGGTGGTCAGAAACAGAGGGTAGCAATTGCTAGAGCCATACTGATGAACCCAAGGATCCTCCTCCTTGATGAAGCGACTAGTGCTTTGGATGCTGAAAG TGAATATCTAGTGCAGGATGCCATGGATTCTCTAATGAAGGGAAGGACTGTTCTAGTTATAGCCCACAGGTTATCAACTGTCCAAAGTGCGGACATTGTG GCAGTTGTTTCTGATGGTCAGATAGTGGAGAGGGGCACTCATGAAGAGCTCCTTAGCAAGGATGGGGTCTACACTGCACTAGTGAAGAGACAACTACAAG GACCCAAAACAGAAGGGTAG
AA sequence Show only first row Show all	>Potri.015G059600.1 pacid=42775827 polypeptide=Potri.015G059600.1.p locus=Potri.015G059600 ID=Potri.015G059600.1.v4.1 annot-version=v4.1 MDRFGGVNGGGGGERTPLLGQGGGRKGNNNNASENNQFPDLEHGDAVPAANVGFGRVFSLAKPDAGKLIIATLALLIASTSNILIPKFGGKIIDIVSGDI ETPEQKAEGLRAVNSTILQIFLVVVVGSVCTALGAWLMSSTSERVVARLRKNLFNHLINQEIAFFDVTRTGELLSRFSEDTQIIKNAATSNLSEALRNVS TALIGLGFMLATSWKLTLLALVVVPAISVAVNQFGRFLREISHKTQAAAAAAASIAEESFGAIRTVRSFAQEGYESSRYSEKVDETLKLGLKQAKLVGFF FGGLNAASTLSVIIVVIYGANLTITGSMTTGALTSFILYSLTVGGSISGLSGLYTVAMKAAGASRRVFQLLDRVSSMPKSGNKCPLSEQVGDVELDDVWF AYPSRPNDMVLRGITLKLQPGSKVALVGPSGGGKTTIANLIERFYDPIKGKVLLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEQNIAYGCEGKVSSM DIENAAKMANAHDFISKFPDKYQTFVGERGLRLSGGQKQRVAIARAILMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADIV AVVSDGQIVERGTHEELLSKDGVYTALVKRQLQGPKTEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Potri.015G059600 [exp]	0	1
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Potri.015G059700 [exp]	3.46	0.8803
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Potri.009G119066 [exp]	5.09	0.8983
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Potri.015G059800 [exp]	8.00	0.9089
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.004G012500 [exp]	9.16	0.8635
AT5G42830			HXXXD-type acyl-transferase fa...		Potri.014G025500 [exp]	20.63	0.8847
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270700 [exp]	21.54	0.8619
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Potri.009G022300 [exp]	22.58	0.8403
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Potri.010G108900 [exp]	23.36	0.8517
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.004G012700 [exp]	24.53	0.8763
AT2G33590			NAD(P)-binding Rossmann-fold s...		Potri.002G004500 [exp]	25.59	0.8776

Compare expression of checked genes

Potri.015G059600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.