Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39040 873 / 0 AtALS1, ABCB27, ALS1, ATTAP2 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) AT1G70610 352 / 7e-112 ABCB26, ATTAP1 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) AT3G62150 349 / 4e-106 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT2G47000 347 / 2e-105 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT3G28860 344 / 2e-104 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT1G02520 338 / 3e-102 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT3G28390 337 / 6e-102 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT4G01830 337 / 6e-102 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1) AT1G02530 332 / 5e-100 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT5G46540 330 / 2e-99 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G059800 [exp] 1177 / 0 AT5G39040 887 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059600 [exp] 1128 / 0 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.017G097200 [exp] 920 / 0 AT5G39040 892 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.018G051800 [exp] 801 / 0 AT5G39040 627 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.010G045900 [exp] 343 / 1e-108 AT1G70610 1033 / 0.0 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) Potri.010G003000 [exp] 353 / 7e-108 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.017G081100 [exp] 348 / 3e-106 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.014G113500 [exp] 340 / 5e-103 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113100 [exp] 338 / 2e-102 AT1G02520 1773 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021145 [exp] 977 / 0 AT5G39040 868 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Lus10007987 [exp] 967 / 0 AT5G39040 875 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Lus10038050 [exp] 352 / 1e-107 AT2G47000 1697 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10009989 [exp] 351 / 6e-107 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10009988 [exp] 345 / 1e-104 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10010012 [exp] 344 / 1e-104 AT1G02520 1526 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10038049 [exp] 344 / 3e-104 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10004520 [exp] 334 / 9e-104 AT2G47000 1145 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10010067 [exp] 339 / 1e-102 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10005249 [exp] 338 / 3e-102 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0241 [poplar] [flax] ABC_membrane PF00664 [poplar] [flax] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.015G059700.1 pacid=42776633 polypeptide=Potri.015G059700.1.p locus=Potri.015G059700 ID=Potri.015G059700.1.v4.1 annot-version=v4.1 ATGGACAGGTTTGGAGGAGTGAATGGTGCTGGTGGTGGTGAAAGAACACCTCTTCTTGGTCAAGGAGGAGGAAGAAAGGGGAATAATAGTGCATCTGAAA ACAATCAGTTCCCAGACCTTGAGCATGGAGATGCAGTGCCAGCTGCAAATGTGGGATTTGGTCGGGTATTTTCACTTGCAAAGCCTGATGCAGGAAAGCT GATAATTGCTACGCTAGCTCTGCTGATTGCATCCACATCAAATATACTGATTCCTAAATTTGGTGGGAAGATAATAGACATTGTGTCAGGAGATAAAGAA ACACCTGAACAGAAAGCTGAAGGTTTACGTGCTGTCAACAGCACCATACTAGAAATCTTTCTCGTTGTCATAGTTGGTTCGGTTTGCACAGCACTCAGAA CATGGTTGATTTCTTCCACTAGTGAAAGGGTTGTTGCTCGGTTGAGAAAGAATTTATTTAATCACCTTATTAACCAGGAGATAGCCTTCTTTGATGTGAC TAGAACAGGAGAGCTACTGAGCAGGTTATCTGAAGATACACAGATCATAAAAAATGCTGCAACCTCAAATCTTTCTGAGGCCCTAAGAAATGTATCAACA GCACTTATTGGTCTTGGCTTCATGCTTGCGACATCGTGGAAGTTAACTTTGTTGGCTTTGGTGGTTGTGCCGGCTATTTCTGTTGCTGTGAGTCAATTTA GCCGCTTCCTTCGTGAAATTTCTCACAAGACTCAAGCTGCAGCTGCTGCTTCTGCTTCAATTGCTGAGGAATCTTTCGGCGCTATACGAACAGTCAGATC TTTTGCACAAGAAGGTTATGAGAGTTCACGCTATTCTGAGAAAGTTGATGAGACATTGAAGCTTGGACTTAAGCAAGCTAAAATGGTTGGGCTCTTCTTT GGAGGTCTAAATGCAGCATCAACCCTCTCAGTGATCATAGTAGTGATATATGGAGCTAACTTGACAATCACAGGATCTATGACCACTGGTGCTCTTACAT CCTTCATTCTCTACAGCCTCACAGTTGGTGGCTCTATATCCGGCTTGTCAGGATTATACACCGAAGCAATGAAAGCTGCGGGAGCCAGCAGGAGGGTTTT CCAGCTTCTAGATCGTGTTTCTTCCATGCTCAAGTCAGGAAATAAGTGTCCTTTAAGTGAGCAAGTCGGTGATGTGGAATTCGATGATGTCTGGTTTGCC TATCCATCTCGTCCTAACCATATGGTTCTCCAGGGAATAACATTGAAACTGCAGCCTGGCTCAAAAGTTGCTCTTGTTGGCCCGAGCGGTGGAGGAAAAA CCACAATAGCAAACTTGATTGAAAGGTTTTATGACCCAATCAAAGGAAAGGTTCTCTTAAATGGAGTTCCTCTAGTAGAAATATCACACGAACATCTACA CAGGAAGATCAGTATAGTGAGCCAGGAGCCTGTTCTTTTCAACTGCTCTATAGAGCAGAATATAGCCTATGGGTGTGAGGGTAAAGTCAGTAGCATGGAT ATAGAAAATGCAGCGAAAATGGCCAATGCACATGATTTCATATCAAAATTCCCAGATAAATATCAAACTTTCGTAGGAGAACGTGGGCTAAGACTTTCAG GTGGTCAGAAACAGAGGGTAGCAATTGCTAGAGCCATACTGATGAACCCAAGGATCCTCCTCCTTGATGAAGCGACTAGTGCTTTGGATGCTGAAAGTGA ATATCTAGTGCAGGATGCCATGGATTCTCTAATGAAGGGAAGGACTGTTCTAGTTATAGCCCACAGGTTATCAACTGTTCAAAGTGCGGACATTGTGGCA GTTGTTTCTGATGGTCAGATAGTGGAGAGGGGCACTCATGAAGAGCTCCTTAGCAAGGATGGGGTCTACACTGCACTAGTGAAGAGACAACTACAAGGAC CAAAACAGAAGTGTAGTTCGAAACCCTAA
AA sequence Show only first row Show all	>Potri.015G059700.1 pacid=42776633 polypeptide=Potri.015G059700.1.p locus=Potri.015G059700 ID=Potri.015G059700.1.v4.1 annot-version=v4.1 MDRFGGVNGAGGGERTPLLGQGGGRKGNNSASENNQFPDLEHGDAVPAANVGFGRVFSLAKPDAGKLIIATLALLIASTSNILIPKFGGKIIDIVSGDKE TPEQKAEGLRAVNSTILEIFLVVIVGSVCTALRTWLISSTSERVVARLRKNLFNHLINQEIAFFDVTRTGELLSRLSEDTQIIKNAATSNLSEALRNVST ALIGLGFMLATSWKLTLLALVVVPAISVAVSQFSRFLREISHKTQAAAAASASIAEESFGAIRTVRSFAQEGYESSRYSEKVDETLKLGLKQAKMVGLFF GGLNAASTLSVIIVVIYGANLTITGSMTTGALTSFILYSLTVGGSISGLSGLYTEAMKAAGASRRVFQLLDRVSSMLKSGNKCPLSEQVGDVEFDDVWFA YPSRPNHMVLQGITLKLQPGSKVALVGPSGGGKTTIANLIERFYDPIKGKVLLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEQNIAYGCEGKVSSMD IENAAKMANAHDFISKFPDKYQTFVGERGLRLSGGQKQRVAIARAILMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADIVA VVSDGQIVERGTHEELLSKDGVYTALVKRQLQGPKQKCSSKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Potri.015G059700 [exp]	0	1
AT1G13340			Regulator of Vps4 activity in ...		Potri.004G100900 [exp]	1.73	0.8841
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Potri.015G059600 [exp]	3.46	0.8803
					Potri.016G140250 [exp]	3.46	0.8817
AT5G36970		NHL25	NDR1/HIN1-like 25 (.1)		Potri.012G145500 [exp]	7.48	0.8771	NHL25.1
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.004G012500 [exp]	8.83	0.8540
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.014G033200 [exp]	9.74	0.8698
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Potri.014G113500 [exp]	14.96	0.8236
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Potri.008G089000 [exp]	16.12	0.8335
AT2G16050			Cysteine/Histidine-rich C1 dom...		Potri.008G055200 [exp]	18.38	0.8260
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.007G074900 [exp]	20.85	0.8239

Compare expression of checked genes

Potri.015G059700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.