Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15630 738 / 0 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT5G60920 620 / 0 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G02210 606 / 0 COBL1 COBRA-like protein 1 precursor (.1) AT3G29810 594 / 0 COBL2 COBRA-like protein 2 precursor (.1) AT1G09790 439 / 2e-152 COBL6 COBRA-like protein 6 precursor (.1) AT5G60950 218 / 4e-69 COBL5 COBRA-like protein 5 precursor (.1) AT4G16120 144 / 2e-37 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT5G49270 139 / 1e-35 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT4G27110 132 / 2e-33 COBL11 COBRA-like protein 11 precursor (.1) AT3G16860 129 / 2e-32 COBL8 COBRA-like protein 8 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G117200 [exp] 683 / 0 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060200 [exp] 681 / 0 AT5G15630 669 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060000 [exp] 624 / 0 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.012G062200 [exp] 609 / 0 AT5G15630 586 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117100 [exp] 602 / 0 AT3G02210 724 / 0.0 COBRA-like protein 1 precursor (.1) Potri.017G098700 [exp] 548 / 0 AT5G60920 614 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098600 [exp] 529 / 0 AT5G60920 601 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G219200 [exp] 459 / 2e-160 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.004G167100 [exp] 389 / 7e-133 AT3G29810 407 / 2e-139 COBRA-like protein 2 precursor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017863 [exp] 778 / 0 AT5G15630 717 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034670 [exp] 776 / 0 AT5G15630 715 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10035131 [exp] 697 / 0 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10031972 [exp] 696 / 0 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034671 [exp] 634 / 0 AT5G60920 732 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034666 [exp] 628 / 0 AT5G15630 627 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10017866 [exp] 625 / 0 AT5G15630 625 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10021144 [exp] 623 / 0 AT5G60920 749 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10007986 [exp] 622 / 0 AT5G60920 755 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10012598 [exp] 596 / 0 AT3G02210 697 / 0.0 COBRA-like protein 1 precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04833 [poplar] [flax] COBRA COBRA-like protein
Representative CDS sequence Show only first row Show all	>Potri.015G060100.1 pacid=42776399 polypeptide=Potri.015G060100.1.p locus=Potri.015G060100 ID=Potri.015G060100.1.v4.1 annot-version=v4.1 ATGAAGTTCATATTCTTGATTGCTCTAGTTTTCATGATAGTTCCTCATGCAGCTGCATACGACCCATTGGATCCAAATGGAAACATAACAATCAAATGGG ATGTAATGTCCTGGACACCAGACGGTTATGTGGCTACAGTAACCATGAGCAACTTCCAAATGTACCGGCACATTATAAGCCCTGGCTGGACTCTATCATG GTCATGGGCTAAGAAAGAAGTGCTATGGTCAATGGTGGGGGCTCAAACTACAGAGCAAGGAGACTGTTCTAAGTTCAAGGGAAACATACCGCATTGCTGT AAAAAGACCCCCACGGTTGTCGACCTGCTACCTGGAGTCCCTTACAACCAGCAATTCTCCAATTGTTGTAAGGGCGGTGTGATGGCGGCATGGGGCCAGG ATCCTACAGCTTCAGTCTCAGCCTTTCAGGTGAGCGTTGGACTTGCCGGAACATCAAATAAAACAGTGAAACTGCCCAAGAACTTCACTTTGCTTGGTCC AGGACCAGGGTATACTTGTGGACCTGCAAAGGTAGTGCCATCTACGGTCTTCCTAACACCTGACCGTAGACGAAAAACCCAGGCCCTCATGACATGGAAT GTCACCTGCACCTACTCACAGTTTCTAGCCTCCAAAAATCCAACCTGCTGCGTTTCATTCTCATCTTTCTACAATGAAACAATCACTCCTTGCCCAACCT GTGCTTGCGGTTGCCAGAACAAGAACAGCTGTGTCAAGAGTAACTCGAAGGAATCCCACAAAAAGGGGATAAACACGCCAAAGAAGGACAACACACCATT GCTACAATGCACACATCATATGTGCCCTATTCGAGTGCACTGGCATGTGAAGGTCAATTACAGAGACTATTGGCGCGCAAAGGTTGCGGTAACTAATTTC AACTACCGGATGAACTACACAGAGTGGACTCTTGTTGTTCAGCATCCAAATCTCAACAATGTCACTCAAGTCTTCAGCTTTGATTACAAGCCTCTCGTAC CTTATGAATCCATAAATGATACTGGTATGTTCTATGGCATGAAGTTCTACAATGACCTTCTAATGGAAGCTGGCCCTTTTGGAAATGTCCAATCTGAGGT GCTTCTTCAGAAGGACAAGAACACTTTTAGCCTGAAGCAGGGATGGGCATTTCCAAGGAAGGTCTACTTCAACGGTGATGAATGCATGCTTCCCCCACCT GACACTTATCCATATCTGCCTAATTCCGCATATGCAAATCCAACTTCAATTCTGTCAATGGCAGCTTCATTGCTCCTGATATTGCTGTCAATGGGGTGA
AA sequence Show only first row Show all	>Potri.015G060100.1 pacid=42776399 polypeptide=Potri.015G060100.1.p locus=Potri.015G060100 ID=Potri.015G060100.1.v4.1 annot-version=v4.1 MKFIFLIALVFMIVPHAAAYDPLDPNGNITIKWDVMSWTPDGYVATVTMSNFQMYRHIISPGWTLSWSWAKKEVLWSMVGAQTTEQGDCSKFKGNIPHCC KKTPTVVDLLPGVPYNQQFSNCCKGGVMAAWGQDPTASVSAFQVSVGLAGTSNKTVKLPKNFTLLGPGPGYTCGPAKVVPSTVFLTPDRRRKTQALMTWN VTCTYSQFLASKNPTCCVSFSSFYNETITPCPTCACGCQNKNSCVKSNSKESHKKGINTPKKDNTPLLQCTHHMCPIRVHWHVKVNYRDYWRAKVAVTNF NYRMNYTEWTLVVQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLLQKDKNTFSLKQGWAFPRKVYFNGDECMLPPP DTYPYLPNSAYANPTSILSMAASLLLILLSMG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Potri.015G060100 [exp]	0	1
AT5G50420			O-fucosyltransferase family pr...		Potri.003G073500 [exp]	1.41	0.9397	FUT13.1
AT2G22125		POM2, CSI1	POM-POM 2, cellulose synthase-...		Potri.005G080100 [exp]	1.73	0.9290
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.010G229600 [exp]	5.09	0.9109	RAB1.1
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Potri.014G040300 [exp]	5.19	0.9159
AT5G34850		ATPAP26, PAP26	purple acid phosphatase 26 (.1...		Potri.018G024800 [exp]	5.91	0.8933
AT1G16860			Ubiquitin-specific protease fa...		Potri.010G252400 [exp]	6.92	0.9291
AT1G13180		ATARP3, DIS1	DISTORTED TRICHOMES 1, ARABIDO...		Potri.008G182700 [exp]	6.92	0.9275
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.008G149300 [exp]	8.30	0.8702
AT3G06550		RWA2	REDUCED WALL ACETYLATION 2, O-...		Potri.010G148500 [exp]	8.66	0.9021
AT1G67510			Leucine-rich repeat protein ki...		Potri.008G176900 [exp]	8.83	0.9008

Compare expression of checked genes

Potri.015G060100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.