Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15630 669 / 0 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT5G60920 619 / 0 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G02210 588 / 0 COBL1 COBRA-like protein 1 precursor (.1) AT3G29810 582 / 0 COBL2 COBRA-like protein 2 precursor (.1) AT1G09790 426 / 6e-147 COBL6 COBRA-like protein 6 precursor (.1) AT5G60950 202 / 5e-63 COBL5 COBRA-like protein 5 precursor (.1) AT4G16120 132 / 4e-33 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT5G49270 127 / 2e-31 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G16860 111 / 4e-26 COBL8 COBRA-like protein 8 precursor (.1) AT4G27110 111 / 5e-26 COBL11 COBRA-like protein 11 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G060100 [exp] 681 / 0 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117200 [exp] 635 / 0 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060000 [exp] 609 / 0 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117100 [exp] 600 / 0 AT3G02210 724 / 0.0 COBRA-like protein 1 precursor (.1) Potri.012G062200 [exp] 600 / 0 AT5G15630 586 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098700 [exp] 531 / 0 AT5G60920 614 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098600 [exp] 511 / 0 AT5G60920 601 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G219200 [exp] 446 / 3e-155 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.004G167100 [exp] 375 / 6e-127 AT3G29810 407 / 2e-139 COBRA-like protein 2 precursor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017866 [exp] 672 / 0 AT5G15630 625 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034666 [exp] 670 / 0 AT5G15630 627 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10017863 [exp] 670 / 0 AT5G15630 717 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034670 [exp] 670 / 0 AT5G15630 715 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10031972 [exp] 648 / 0 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10035131 [exp] 647 / 0 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10021144 [exp] 605 / 0 AT5G60920 749 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10007986 [exp] 602 / 0 AT5G60920 755 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034671 [exp] 602 / 0 AT5G60920 732 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10012598 [exp] 574 / 0 AT3G02210 697 / 0.0 COBRA-like protein 1 precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04833 [poplar] [flax] COBRA COBRA-like protein
Representative CDS sequence Show only first row Show all	>Potri.015G060200.1 pacid=42776454 polypeptide=Potri.015G060200.1.p locus=Potri.015G060200 ID=Potri.015G060200.1.v4.1 annot-version=v4.1 ATGGATTTTGATAGATTTTCATCCCCATTTTTCTCTGCTGTTTGCTTTATTCTGGTATTCTCTCGTGCAGAGGCATATGACTATCTGGACCCAACTGGGA ACATAACGCTCAAATGGGACGTCATCTCATGGACTCCAGATGGTTATGTGGCAGTGGTGACAATGACCAACTTCCAAATGTATCGTCACATCATGAGTCC TGGCTGGACCGTAGGATGGACATGGGCTAAGAAAGAAGTTATCTGGTCAATGGTGGGAGCTCAAGCCACTGAGCAAGGAGACTGTTCCAAGTTCAGAATG AACATCCCGCACTGTTGTATGAAGAATCCTACTGTCGTTGACATGCTTCCAGGGGTGCCTTACAACCAACAAATTGCCAATTGCTGCAAAGGTGGTGTGG TATCGTCATGGGGACAGGACCCTTCAGCAGCAGTTTCTTCTTTTCAGTTGAGTGTTGGACGTTCTGGTACTACTAATAAAACAGTAAGATTGCCGAAGAA CTTCACTTTGCTCGGTCCTGGACTAGGCTACTCTTGCAGCCAAGCAAAAATTGTTCCATCCACTGTCTTTCTAACTTCCGATGGCCGTCGAAAAACTCAA GCAATGATGACATGGAATGTGACATGCACATACTCGCAAATGTTGGCGTCTAAGAATCCAACCTGTTGCGTATCGATGTCATCTTTTTACAACTCTACCA TCACTCCTTGTCGAACTTGTGCTTGTGGCTGCCAGAACAACAGCACTTGTGTTCCGAGTGATTCGATGATTCAAAGCGTTGTAGGACTAAACACACCAAC GAAAGATAATACCCCATTAGTGCAATGCACGAAACACAATTGCCCTATCCGTGTGCATTGGCATGTGAAGTTGAACTACAAGGAGTATTGGCGAGTGAAA ATTTCCATCACCAATTTCAACTACCGCCTGAACTACACACAGTGGACACTTGTCGCTCAGCATCCAAATCTTAACAATATCACTCAAGTTTTTAGCTTTG CCTACAAGCCACTCTTGCCATATAAATCAGCAAATGACTCTGGAATGTTTTATGGTGTAAAGTTTTTCAATGATATCCTAATGGAAGCCGGCCCAGATGG AAATATCCAGACAGAGTTGATTCTGCAGAAGGATAAGAACACATTTACACTGAACAAGGGATGGGCTTTCCCAAGAAAAGTCTACTTCAATGGGGATGAA TGCATGATGCCCCTTCCTGACGATTACCCATACTTACCTAATTCTGCCCCAAAAAATGTGATTGGGTTATCATTTGTTATTTCTGCATTTTTCCTTCTAG AGTTGCTAGCCTTTTGGTGA
AA sequence Show only first row Show all	>Potri.015G060200.1 pacid=42776454 polypeptide=Potri.015G060200.1.p locus=Potri.015G060200 ID=Potri.015G060200.1.v4.1 annot-version=v4.1 MDFDRFSSPFFSAVCFILVFSRAEAYDYLDPTGNITLKWDVISWTPDGYVAVVTMTNFQMYRHIMSPGWTVGWTWAKKEVIWSMVGAQATEQGDCSKFRM NIPHCCMKNPTVVDMLPGVPYNQQIANCCKGGVVSSWGQDPSAAVSSFQLSVGRSGTTNKTVRLPKNFTLLGPGLGYSCSQAKIVPSTVFLTSDGRRKTQ AMMTWNVTCTYSQMLASKNPTCCVSMSSFYNSTITPCRTCACGCQNNSTCVPSDSMIQSVVGLNTPTKDNTPLVQCTKHNCPIRVHWHVKLNYKEYWRVK ISITNFNYRLNYTQWTLVAQHPNLNNITQVFSFAYKPLLPYKSANDSGMFYGVKFFNDILMEAGPDGNIQTELILQKDKNTFTLNKGWAFPRKVYFNGDE CMMPLPDDYPYLPNSAPKNVIGLSFVISAFFLLELLAFW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Potri.015G060200 [exp]	0	1
AT1G66120			AMP-dependent synthetase and l...		Potri.016G034800 [exp]	15.19	0.8974
AT3G13840	GRAS		GRAS family transcription fact...		Potri.003G065400 [exp]	18.33	0.8638
AT5G05340			Peroxidase superfamily protein...		Potri.016G132800 [exp]	23.28	0.8937	Pt-PRX1.7
					Potri.001G130800 [exp]	27.22	0.8911
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Potri.010G067700 [exp]	30.08	0.8903
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.003G122500 [exp]	32.55	0.8910	CYP87.2
AT1G18390			Protein kinase superfamily pro...		Potri.010G145400 [exp]	33.22	0.8903
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Potri.010G067600 [exp]	34.52	0.8883
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Potri.012G071300 [exp]	35.39	0.8903
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.010G139600 [exp]	47.05	0.8871	CYP749A9

Compare expression of checked genes

Potri.015G060200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.