Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69170 153 / 3e-41 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT5G50570 131 / 2e-33 SBP SPL13, SPL13A SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) AT5G50670 131 / 2e-33 SBP SPL13B SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT5G43270 125 / 6e-31 SBP SPL2 squamosa promoter binding protein-like 2 (.1.2.3) AT2G42200 124 / 6e-31 SBP SPL9, AtSPL9 squamosa promoter binding protein-like 9 (.1) AT1G02065 122 / 1e-30 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT3G57920 122 / 1e-30 SBP SPL15, MSC1 squamosa promoter binding protein-like 15 (.1) AT2G33810 116 / 1e-30 SBP SPL3 squamosa promoter binding protein-like 3 (.1) AT3G60030 126 / 3e-30 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT1G27370 122 / 3e-30 SBP SPL10 squamosa promoter binding protein-like 10 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G097900 [exp] 276 / 3e-86 AT1G69170 169 / 2e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.010G154300 [exp] 266 / 2e-82 AT1G69170 152 / 3e-41 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.015G098900 [exp] 136 / 3e-35 AT5G50570 233 / 1e-73 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.012G100700 [exp] 132 / 5e-34 AT5G50570 222 / 6e-70 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.016G048500 [exp] 132 / 1e-33 AT2G42200 217 / 3e-67 squamosa promoter binding protein-like 9 (.1) Potri.004G046700 [exp] 123 / 5e-33 AT1G53160 135 / 4e-41 squamosa promoter binding protein-like 4 (.1.2) Potri.002G142400 [exp] 125 / 2e-31 AT1G27360 141 / 5e-38 squamosa promoter-like 11 (.1.2.3.4) Potri.014G057700 [exp] 124 / 2e-31 AT1G02065 247 / 3e-80 squamosa promoter binding protein-like 8 (.1.2) Potri.002G142200 [exp] 123 / 4e-31 AT1G02065 243 / 8e-79 squamosa promoter binding protein-like 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021141 [exp] 334 / 3e-108 AT1G69170 168 / 9e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10007984 [exp] 319 / 2e-102 AT1G69170 167 / 2e-46 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10000643 [exp] 167 / 9e-45 AT1G69170 192 / 4e-55 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10036812 [exp] 161 / 1e-43 AT1G69170 186 / 2e-54 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10016275 [exp] 135 / 3e-35 AT2G42200 179 / 1e-53 squamosa promoter binding protein-like 9 (.1) Lus10021034 [exp] 135 / 6e-35 AT2G42200 199 / 2e-60 squamosa promoter binding protein-like 9 (.1) Lus10012020 [exp] 135 / 3e-34 AT2G42200 177 / 5e-51 squamosa promoter binding protein-like 9 (.1) Lus10011348 [exp] 131 / 5e-34 AT5G50670 164 / 3e-48 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10003126 [exp] 131 / 6e-34 AT5G50670 161 / 5e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10023818 [exp] 131 / 1e-33 AT2G42200 191 / 3e-57 squamosa promoter binding protein-like 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [poplar] [flax] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Potri.015G060400.5 pacid=42776029 polypeptide=Potri.015G060400.5.p locus=Potri.015G060400 ID=Potri.015G060400.5.v4.1 annot-version=v4.1 ATGGAGTCTGGGAGCTATGTTCTTGGAGGGAAGGGTCATGTATCCAATGAGCCAACATCATCTTCTGATACGTTTTCAAGAAGCAAAAATGTTTTGATGA GTTGCGATTTGAAAAATCAATGTAATTTTGAATATAACTTCTTAGCCTCAGGTTCACAAGCTATTGAGAATGGAGCTCGAGGGGAACTAGGTTATCAGCA ATTGATAGAGAAACATGCACCTGACACCTCAATCAGGAATGCCTTAATAAGTGAGGTGTCTGGTAGAAAAAACATCAATCCCTTTGTGGTAACCCCAAAT TCATTCTCCTTAGAAGATGAGTCCACTTCCAGGCTTTCAAGCACTGCGATGGACTCTGATTGCAGGGTTTCTGCATTCATTGATTTGAATCTTGGGAGGT TTGGTGATCCTAGAGATGTACAGAATTGCAGAAGAATTCCCAAAAGCACATCTATCGTGTCCCCATCTAAGTCATCTGCACCTCCAAGAAGGCATCGAGC AGGAATGAATTCCCATACTGCCTATTGCCAAGTTTATGATTGTAACAAGGATCTCAGCTCCTCAAAAGAGTATCACAAGAGACATAAAGTATGTGAAGTT CACTCCAGGACTGCCAAAGTCATTGTCAATGGAATAGAACAGAGGTTCTGTCAGCAATGCAGCAGGTTTCATTTGCTCGCTGAATTTGATGATGGTAAGC GCAGCTGTCGCAAACGCCTTGCAGGCCACAATGAGCGAAGGAGAAAGCCTCAAGTTGGTCTTCAATCTGGACGAACTGGAAGGCTACTTCACCCTTACAG TGGCTTTTCCAGCAGTAGGTTTCACGAAACTGTGTTACCAACAACATCTTTTATCTGCCAAGACATACTCCAGAGTGGCCTATCGCATCCTGATAAATAT GGAGCAAATGATTGGTGCAAGCGTGTAAAAATTGAAGATGGGACTGGTTTTAGTCCACCATCAGCAATTCCCATTACAAATGCATATCTGCACTCAAAGC CCCTCTTCCCTTCTAATAATTCTGAGAAAATGTTTCCAACTTTTCATGAAGATGGAGCTAGCACTGCATCAGGAAGCATTTTCAATGAGAGCACTCATAG ATATCCAGATGTTATGGGATGCAGAACTTCTAGTTCACATTCGTTTCTCCAGGATACGTCTTTGGGAAATGATGAATTCGCTGCTTTTGATGCAGCATCA ACCATTCAAGAGTTATCGGGGATCACAGCTTCTGGCTGTGCTCGCTCTCTTCTGTCATCTCAATCACAAAATTCTTCAAGCCATTCATCAGGAATTCCTA TGGCCCAGCAGCTGCTAGTTTCATGCAGAAATACATGTTACAGCATGGATCAAATCATAGGAGTTAGCTCACAGGTTTCTTCAAGTACTGGGGTACCAAA TAAGTTCCCTTCATGGGTGACGAGTTCCGTCAAGGGGAGTCATTTGGGTCCAATGCCGATACCTGAAAATAGTCATGTCGTCAACTTTGATATAACAGAT GGGGTATACCATGGATTTAATGCCAAAGATCACTTTGGCAGTGAAGATGACACGACTATTGACTTGCTTCAACTGTCGTCACAGCTTCAGCGAGTGGAAC ATCAAAAGCAATCAATGCAAGAGAAACAGGAAATGATCCTTTCAGCTGCCCCGGCATCACTCAAAAAGGCCAGTAAATTTCTTTGA
AA sequence Show only first row Show all	>Potri.015G060400.5 pacid=42776029 polypeptide=Potri.015G060400.5.p locus=Potri.015G060400 ID=Potri.015G060400.5.v4.1 annot-version=v4.1 MESGSYVLGGKGHVSNEPTSSSDTFSRSKNVLMSCDLKNQCNFEYNFLASGSQAIENGARGELGYQQLIEKHAPDTSIRNALISEVSGRKNINPFVVTPN SFSLEDESTSRLSSTAMDSDCRVSAFIDLNLGRFGDPRDVQNCRRIPKSTSIVSPSKSSAPPRRHRAGMNSHTAYCQVYDCNKDLSSSKEYHKRHKVCEV HSRTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGLQSGRTGRLLHPYSGFSSSRFHETVLPTTSFICQDILQSGLSHPDKY GANDWCKRVKIEDGTGFSPPSAIPITNAYLHSKPLFPSNNSEKMFPTFHEDGASTASGSIFNESTHRYPDVMGCRTSSSHSFLQDTSLGNDEFAAFDAAS TIQELSGITASGCARSLLSSQSQNSSSHSSGIPMAQQLLVSCRNTCYSMDQIIGVSSQVSSSTGVPNKFPSWVTSSVKGSHLGPMPIPENSHVVNFDITD GVYHGFNAKDHFGSEDDTTIDLLQLSSQLQRVEHQKQSMQEKQEMILSAAPASLKKASKFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Potri.015G060400 [exp]	0	1
AT1G26320			Zinc-binding dehydrogenase fam...		Potri.007G143800 [exp]	1.41	0.8548
AT5G60970	TCP	TCP5	TEOSINTE BRANCHED 1, cycloidea...		Potri.015G058800 [exp]	7.74	0.8195
AT5G10170		ATMIPS3	MYO-INOSITOL-1-PHOSTPATE SYNTH...		Potri.005G078700 [exp]	8.83	0.8318	MIPS.1
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Potri.010G150800 [exp]	12.24	0.7784	Pt-SP1.1
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.001G005100 [exp]	19.74	0.8335
AT2G36290			alpha/beta-Hydrolases superfam...		Potri.008G021400 [exp]	22.91	0.8053
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Potri.008G115800 [exp]	25.09	0.7793
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073016 [exp]	26.07	0.8043
AT1G67050			unknown protein		Potri.017G115700 [exp]	29.66	0.7876
AT3G61180			RING/U-box superfamily protein...		Potri.002G155200 [exp]	30.16	0.7897

Compare expression of checked genes

Potri.015G060400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.