Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATECP63.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36640 200 / 2e-59 ATECP63 embryonic cell protein 63 (.1) AT3G53040 157 / 4e-43 late embryogenesis abundant protein, putative / LEA protein, putative (.1) AT2G42560 48 / 1e-05 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) AT2G18340 46 / 4e-05 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1.2) AT2G03850 44 / 6e-05 Late embryogenesis abundant protein (LEA) family protein (.1) AT1G72100 45 / 0.0001 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G090300 [exp] 52 / 4e-07 AT2G42560 85 / 3e-17 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035586 [exp] 185 / 3e-54 AT2G36640 211 / 5e-64 embryonic cell protein 63 (.1) Lus10008638 [exp] 160 / 4e-44 AT2G36640 249 / 4e-77 embryonic cell protein 63 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02987 [poplar] [flax] LEA_4 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Potri.015G060600.1 pacid=42775054 polypeptide=Potri.015G060600.1.p locus=Potri.015G060600 ID=Potri.015G060600.1.v4.1 annot-version=v4.1 ATGGCATCCAGGCACGAGAAGGAGGAGAGGGCTGAGGCAGCAGCATGGCAAGCAGCATCTGATCTCAGGGACGTTAATAGAGAAAGAGAATGCTATGAAG AACGAGAAGCCAAAATGGCCACAGATCAACCACAACAAGAAAGACCAGGGGTTATTGGATCGGTGTTAAGATCAGTTGCTGACACTTTGGGGCATGCTAA AGATGCTGTTGTTGGTATGAGCTTTGAGGCTGCAGAGCAAACAACGGAAACTGCTGATGCAGCTGAAGAGAAGGCTAGAGAGAATAAGGATTCTGTTGCA GAGAAGGCAAAGGGGTATAAAAATTGTACGACTCAGAAGGCGAAAGAGACTACAGATTCTGCTGCATGTAAGATAGATGAAACCAAGGAATCAGCAAAGC AAAAGATTGGGGAGTATGAAGATAAGGCGAAAGAGTACAAAGATTATGCCGCTCAGAAAGCCAAAGACACTAAGGATTCGGTGATGGGAAAGGTCGATGA GTACAAAGATTATGCAACAGAGAAAGCTAAGGAAACAAAGAATTCTGCTTTAGAGAAGACAGGTGAGTATAAGGATTACGCTGCAGAGAAGTCAAAGGAA ACGAAGGATTATACAGCAGAGAAAGCAAAGGAAGGAAAGGATGTTACTGTTAGTAAGCTCGGCGGGCTCACAGAGTCGGCTAAAGATGCTGCAAGAAAAG CCGTGGACTTCTTATCTGGTAAAAAAGAGGAAGTGAAAGAGAAAGCAGCAGAGACTACAGAGGCAACCAAGGAGAAATTGAGTGAAACCGAGGAGGCGGC AAGGAGGAAAACGGAGGGGATGAAGCTGAGAGGTGAAGAACATAGAGAGGAAGCTGCCCAAAAAGAAGCTAAAGACATTGAAGCTGAAAGAGGAACTACA ACAAGAGAGACAATCTTTGACAGTCTTGGGTTTGGGTCAATTAAGGACAGCATAAGAGGGAAGTTGACAACGGCAGAGGACATTGCTGAAGAAACAAGGG CTGCACGTGAGCGCGGAGGTACCGGACGAAAGTGTTTAAATAAAGATACTGGGAAGGAGGAGATGGTGATCCCCATTGAAGAGAATGCCACGGGAGCTGT GGCATCCATCCTAAAAGCGTCCGATCAGATGAGTGGTCAAACTTTCAATGATGTTGGACGAATGGATGATGAGGGAGTCATTCGAGTGGAAATGGAACGC ACTCCAAAATTGAGCAAAGATCGCTGA
AA sequence Show only first row Show all	>Potri.015G060600.1 pacid=42775054 polypeptide=Potri.015G060600.1.p locus=Potri.015G060600 ID=Potri.015G060600.1.v4.1 annot-version=v4.1 MASRHEKEERAEAAAWQAASDLRDVNRERECYEEREAKMATDQPQQERPGVIGSVLRSVADTLGHAKDAVVGMSFEAAEQTTETADAAEEKARENKDSVA EKAKGYKNCTTQKAKETTDSAACKIDETKESAKQKIGEYEDKAKEYKDYAAQKAKDTKDSVMGKVDEYKDYATEKAKETKNSALEKTGEYKDYAAEKSKE TKDYTAEKAKEGKDVTVSKLGGLTESAKDAARKAVDFLSGKKEEVKEKAAETTEATKEKLSETEEAARRKTEGMKLRGEEHREEAAQKEAKDIEAERGTT TRETIFDSLGFGSIKDSIRGKLTTAEDIAEETRAARERGGTGRKCLNKDTGKEEMVIPIEENATGAVASILKASDQMSGQTFNDVGRMDDEGVIRVEMER TPKLSKDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36640		ATECP63	embryonic cell protein 63 (.1)		Potri.015G060600 [exp]	0	1	ATECP63.1
AT5G52300		LTI65, RD29B	RESPONSIVE TO DESSICATION 29B,...		Potri.012G141300 [exp]	1.00	0.9553
AT4G31830			unknown protein		Potri.006G183800 [exp]	2.44	0.8991
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Potri.016G046350 [exp]	2.82	0.8995
AT1G23070			Protein of unknown function (D...		Potri.018G062600 [exp]	4.24	0.8744
AT2G21490		LEA	dehydrin LEA (.1)		Potri.004G158500 [exp]	6.32	0.8836
AT2G21820			unknown protein		Potri.010G176200 [exp]	8.66	0.7947	PM41.1
AT5G50360			unknown protein		Potri.015G091900 [exp]	10.19	0.8358
AT5G51760		AHG1	ABA-hypersensitive germination...		Potri.015G133900 [exp]	10.24	0.8691
AT1G07900	AS2	LBD1	LOB domain-containing protein ...		Potri.008G043900 [exp]	11.40	0.8403
AT2G18540			RmlC-like cupins superfamily p...		Potri.007G029100 [exp]	11.66	0.8492

Compare expression of checked genes

Potri.015G060600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.