Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18580 850 / 0 GAUT11 galacturonosyltransferase 11 (.1) AT2G20810 594 / 0 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT5G47780 468 / 1e-159 GAUT4 galacturonosyltransferase 4 (.1) AT3G61130 469 / 3e-159 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT4G38270 454 / 2e-153 GAUT3 galacturonosyltransferase 3 (.1.2) AT3G25140 413 / 5e-139 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT2G46480 370 / 7e-123 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT3G02350 367 / 4e-121 GAUT9 galacturonosyltransferase 9 (.1) AT5G54690 332 / 5e-108 IRX8, GAUT12, LGT6 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) AT3G01040 325 / 3e-105 GAUT13 galacturonosyltransferase 13 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G064500 [exp] 969 / 0 AT1G18580 846 / 0.0 galacturonosyltransferase 11 (.1) Potri.019G108900 [exp] 582 / 0 AT2G20810 838 / 0.0 galacturonosyltransferase 10 (.1) Potri.013G146200 [exp] 570 / 0 AT2G20810 820 / 0.0 galacturonosyltransferase 10 (.1) Potri.002G151400 [exp] 481 / 6e-164 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.014G073800 [exp] 472 / 2e-160 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.016G001700 [exp] 469 / 1e-159 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.004G206000 [exp] 468 / 5e-159 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.006G001100 [exp] 441 / 2e-149 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G246500 [exp] 420 / 9e-142 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007979 [exp] 895 / 0 AT1G18580 845 / 0.0 galacturonosyltransferase 11 (.1) Lus10013506 [exp] 886 / 0 AT1G18580 843 / 0.0 galacturonosyltransferase 11 (.1) Lus10018554 [exp] 615 / 0 AT2G20810 872 / 0.0 galacturonosyltransferase 10 (.1) Lus10041389 [exp] 476 / 2e-162 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10009311 [exp] 476 / 3e-162 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 474 / 6e-160 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10026546 [exp] 470 / 1e-154 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10038739 [exp] 456 / 2e-154 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10013832 [exp] 454 / 5e-143 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011834 [exp] 410 / 1e-137 AT3G25140 949 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.015G060800.2 pacid=42775383 polypeptide=Potri.015G060800.2.p locus=Potri.015G060800 ID=Potri.015G060800.2.v4.1 annot-version=v4.1 ATGAGGAGGCGACCGGCAGAGTACCGGCGTCCAGTTAGAAGGAGGTTATCGCAGTGGATCTGGGCGCTTATTGGGATGTTCTTGATTGCAGGATTGGTTT TGTTTGTGTTTCTCCACAATCATCATGAAGATCAGGTTAACCAGCCAATAATGGGTGAACATGCAATAAAACGCGGGGGTTTTAATTTCACCAAGGAAAT ATTAAATGCCAGCTCATTTTCACGGCAGTTGGCAGAACAAATGACACTTGCCAAGGCTTATGTCATAATAGCTAAGGAGCACAACAACCTTCATCTTGCT TGGGAACTGAGTAAAAAGATAAGAAGTTGCCAACTATTGCTTTCAAAAGCTGCCATGAGAGGGGAGCCCATAACAGTAGAAGAAGCAGAGCCAATAATCA GTAGCCTATCATATCTAATTTTCAAGGCACAAGATGCTCATTATGATATTGCAACCACCATGATGACAATGAAATCTCATATCCAAGCCCTAGAAGAGCG AACAAATGCAGCAACAGTTCAGAGTACACTCTTTGGTCAGTTAGTGGCTGAAGTTTTGCCCAAGAGTCTTCACTGCCTGAAAGTTAAGCTCATAAATGAC TGGCTTAAGCAGCTGCCCCTCCAAAATCATGCAGAGGAGAAGAGAAACTCCCCTCGAGTTGTGGACAACAATCTCTATCATTTCTGCATATTTTCAGACA ATATTCTGGCCACCTCTGTGGTGGTCAACTCCACAGTCTGCAATGCTGACCATCCAAAACAACTTGTTTTCCACATAGTAACAAATGGAATCAGCTATGG ATCCATGCAGGCTTGGTTTCTAACTAATGACTTCAAAGGGGCCACTGTAGAAGTGCAGAATATAGAAGAGTTCTCTTGGTTGAATGCTTCTTATGCTCCT GTTATCAAACAGATCATTCATCAAGATTCAAGGGCCTACTACTTTGGGGCAGATCAAGATATGAAGGTTGAGCCAAAACTGCGGAACCCTAAGTACCTGT CTTTGCTCAATCATCTCCGCTTTTACATCCCTGAGATCTATCCGCTTCTGGAAAAGATTGTCTTCCTTGATGATGATGTTGTTGTCCAGAAGGATCTGAC AAGACTGTTTTCATTGGATTTGCATGGGAATGTTAATGGAGCTGTGGAAACCTGTCTTGAAACATTCCATCGATATTATAAGTATATCAATTTTTCAAAC CCAATCATCAGCTCTAAATTTGACCCGCAGGCATGTGGTTGGGCGTTTGGAATGAATATTTTTGATTTGATTGCATGGAGGAAGGAAAATGTGACTGCAC AATATCATTACTGGCAGGAACAGAATGCTGATCAGACACTGTGGAAGCTGGGAACACTCCCCCCAGCCCTTCTAGCATTTTATGGACTGACTGAGCCGCT TGATCGGAGATGGCATGTGTTAGGATTGGGATATGATATGAACATTGATGACCGTCTGATTGACAGTGCTGCGGTTATTCACTTTAATGGGAACATGAAA CCATGGCTTAAATTGGCCATTAGCAGGTACAAGCCTCTTTGGGAAAGGTATGTAAATCAGAGTCACCCGTATTACCAAGATTGTGTCACTAGTTGA
AA sequence Show only first row Show all	>Potri.015G060800.2 pacid=42775383 polypeptide=Potri.015G060800.2.p locus=Potri.015G060800 ID=Potri.015G060800.2.v4.1 annot-version=v4.1 MRRRPAEYRRPVRRRLSQWIWALIGMFLIAGLVLFVFLHNHHEDQVNQPIMGEHAIKRGGFNFTKEILNASSFSRQLAEQMTLAKAYVIIAKEHNNLHLA WELSKKIRSCQLLLSKAAMRGEPITVEEAEPIISSLSYLIFKAQDAHYDIATTMMTMKSHIQALEERTNAATVQSTLFGQLVAEVLPKSLHCLKVKLIND WLKQLPLQNHAEEKRNSPRVVDNNLYHFCIFSDNILATSVVVNSTVCNADHPKQLVFHIVTNGISYGSMQAWFLTNDFKGATVEVQNIEEFSWLNASYAP VIKQIIHQDSRAYYFGADQDMKVEPKLRNPKYLSLLNHLRFYIPEIYPLLEKIVFLDDDVVVQKDLTRLFSLDLHGNVNGAVETCLETFHRYYKYINFSN PIISSKFDPQACGWAFGMNIFDLIAWRKENVTAQYHYWQEQNADQTLWKLGTLPPALLAFYGLTEPLDRRWHVLGLGYDMNIDDRLIDSAAVIHFNGNMK PWLKLAISRYKPLWERYVNQSHPYYQDCVTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Potri.015G060800 [exp]	0	1
AT4G02350		SEC15B	exocyst complex component sec1...		Potri.014G127400 [exp]	1.41	0.6732
AT2G17200		DSK2	ubiquitin family protein (.1)		Potri.009G166000 [exp]	3.46	0.6329
AT5G35430			Tetratricopeptide repeat (TPR)...		Potri.018G126100 [exp]	4.47	0.5910
AT4G39220		ATRER1A	Rer1 family protein (.1)		Potri.007G047800 [exp]	7.48	0.6544
AT4G09580			SNARE associated Golgi protein...		Potri.013G113000 [exp]	12.48	0.5489
AT1G06070	bZIP	AtbZIP69	Basic-leucine zipper (bZIP) tr...		Potri.007G130800 [exp]	22.09	0.5732
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Potri.015G137200 [exp]	28.61	0.5805
					Potri.004G178500 [exp]	42.04	0.5476
AT5G44150			unknown protein		Potri.017G017200 [exp]	67.62	0.5391
AT5G04430		BTR1S, BTR1L, B...	BINDING TO TOMV RNA 1S \(SHORT...		Potri.008G030700 [exp]	74.61	0.4991

Compare expression of checked genes

Potri.015G060800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.