Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61340 164 / 5e-48 unknown protein AT1G26650 61 / 3e-10 unknown protein AT1G69430 56 / 1e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G068000 [exp] 298 / 5e-101 AT5G61340 154 / 2e-45 unknown protein Potri.004G102800 [exp] 101 / 2e-24 AT5G61340 73 / 2e-14 unknown protein Potri.010G163400 [exp] 64 / 3e-11 AT1G26650 453 / 1e-160 unknown protein Potri.008G091500 [exp] 60 / 5e-10 AT1G26650 401 / 3e-140 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034727 [exp] 193 / 1e-58 AT5G61340 193 / 4e-59 unknown protein Lus10021641 [exp] 192 / 1e-58 AT5G61340 191 / 5e-58 unknown protein Lus10015723 [exp] 120 / 2e-31 AT5G61340 135 / 2e-37 unknown protein Lus10003483 [exp] 108 / 4e-27 AT5G61340 153 / 2e-44 unknown protein Lus10037135 [exp] 61 / 4e-10 AT1G69430 431 / 8e-152 unknown protein Lus10036796 [exp] 60 / 9e-10 AT1G69430 434 / 4e-153 unknown protein Lus10010246 [exp] 39 / 0.0006 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G060900.1 pacid=42775841 polypeptide=Potri.015G060900.1.p locus=Potri.015G060900 ID=Potri.015G060900.1.v4.1 annot-version=v4.1 ATGCCCATTTCCCTCCCATCAATGGATCAAGATGATATTCCAATGGAAGAAACAGGCAGCAAGATTTTGCGAAAATCAATCTTTACTTTCCTTCAAAACT ATCAATACTTCACCTCTACCGCGGCCCTTCTCGCCTTCCCTTTCTCGGCCTCAATCCTCCTCGCACACCTGCTTCTTGACTCCTCCTCATCTCTCCTTCC AGTCATTTACCACAGGTTGACCAGTCTGTTCCAGGCGGCAGGATTCCCTCCCTCCTCGGAGTTGCTCAACCTTGTCAATCTCAAGCTCTCTCAAACAATC TCCCTTTCAATTCTTACGCTTCCCTTTGCCCTTACTTTCTTGCTCATCATGAAAGCATCTGTTATTCAAGCTCTCAATAATAATCACAAAAAGCCACCTT CTTTCTATTGTGTTTTTTCCATTTTCAATCCTCTCCTCCTCACCTACATATGCAATTCATTATTGATCCTCTCAGCGAATGCCACAGCTTTTTCTCTCTT ATTCTTTACTTCTAATCTTTTCCTTGAGAATATTGGATTTGGCTTTCATCTCTTCCTCTCAGCTGCTGGAGCTGTTGTTTACTCCATCATCCTCTCCCAT ACAATCATAATATGCAACTTAGCGTTGGTCTTATCGGGCGTGGAAAGAATCGGAGGATACCTGGCCATTCTAAAAGCCTGCGTTATGATCAGGGGAAGGG CTTCAACGGCGTTATCACTTGCACTTGCTGTCAATATAGCCCTGGCAGGGGTTGAAGCATTGTTCCGATACCGGATTGTGAGAACTTATCGTCATATCCG TGAAGCACCAAGCTCTTTGTCAATAATTTCAGAGGGGACGCTTATCATCTACTTGTATTCAATTCTTGTTGTTCTTGAAACCATTGTCAGTTGCATCTTC TTCAAAAGCTGCAAGGCAACCTACTCTTGCATTGATCAACAAGGTAAATACGCTTACAGGATCAATGAAATTGAAGAGGAATTAGAAAATGGTGGTTATA TTATTAGCTTAAAGGTGTAG
AA sequence Show only first row Show all	>Potri.015G060900.1 pacid=42775841 polypeptide=Potri.015G060900.1.p locus=Potri.015G060900 ID=Potri.015G060900.1.v4.1 annot-version=v4.1 MPISLPSMDQDDIPMEETGSKILRKSIFTFLQNYQYFTSTAALLAFPFSASILLAHLLLDSSSSLLPVIYHRLTSLFQAAGFPPSSELLNLVNLKLSQTI SLSILTLPFALTFLLIMKASVIQALNNNHKKPPSFYCVFSIFNPLLLTYICNSLLILSANATAFSLLFFTSNLFLENIGFGFHLFLSAAGAVVYSIILSH TIIICNLALVLSGVERIGGYLAILKACVMIRGRASTALSLALAVNIALAGVEALFRYRIVRTYRHIREAPSSLSIISEGTLIIYLYSILVVLETIVSCIF FKSCKATYSCIDQQGKYAYRINEIEEELENGGYIISLKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61340			unknown protein		Potri.015G060900 [exp]	0	1
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.010G244900 [exp]	2.44	0.9372
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.006G200300 [exp]	4.58	0.9298
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Potri.001G295800 [exp]	5.19	0.9063
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Potri.001G099800 [exp]	5.29	0.9299
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.016G112000 [exp]	5.65	0.8712
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Potri.014G029900 [exp]	8.94	0.9136
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.008G012400 [exp]	9.79	0.9246
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.017G016700 [exp]	10.00	0.9236
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Potri.003G151700 [exp]	10.67	0.9233	POPTRKOR2,KOR1.3
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.010G198250 [exp]	10.90	0.8846

Compare expression of checked genes

Potri.015G060900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.