Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07740 724 / 0 actin binding (.1) AT1G31810 498 / 4e-153 AFH14 Formin Homology 14 (.1) AT2G25050 486 / 3e-150 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) AT5G07770 469 / 4e-148 Actin-binding FH2 protein (.1.2) AT3G32400 432 / 1e-137 Actin-binding FH2/DRF autoregulatory protein (.1) AT5G58160 449 / 1e-134 actin binding (.1) AT5G07650 426 / 4e-131 Actin-binding FH2 protein (.1) AT5G07780 405 / 8e-128 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G07760 397 / 4e-120 formin homology 2 domain-containing protein / FH2 domain-containing protein (.1) AT1G42980 184 / 2e-51 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G067900 [exp] 1097 / 0 AT5G07740 727 / 0.0 actin binding (.1) Potri.006G185601 [exp] 506 / 3e-163 AT5G58160 603 / 0.0 actin binding (.1) Potri.006G263700 [exp] 526 / 3e-162 AT2G25050 627 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.018G019600 [exp] 525 / 1e-161 AT2G25050 636 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.018G108000 [exp] 516 / 2e-160 AT5G58160 600 / 0.0 actin binding (.1) Potri.006G185501 [exp] 486 / 1e-157 AT5G58160 598 / 0.0 actin binding (.1) Potri.003G103800 [exp] 507 / 2e-155 AT1G31810 718 / 0.0 Formin Homology 14 (.1) Potri.007G054900 [exp] 126 / 4e-29 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.002G240232 [exp] 125 / 9e-29 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003482 [exp] 734 / 0 AT5G07740 714 / 0.0 actin binding (.1) Lus10015724 [exp] 718 / 0 AT5G07740 723 / 0.0 actin binding (.1) Lus10035830 [exp] 503 / 4e-154 AT5G58160 619 / 0.0 actin binding (.1) Lus10007447 [exp] 496 / 7e-153 AT5G58160 604 / 0.0 actin binding (.1) Lus10036612 [exp] 499 / 2e-151 AT5G58160 608 / 0.0 actin binding (.1) Lus10024450 [exp] 486 / 9e-149 AT5G58160 600 / 0.0 actin binding (.1) Lus10023804 [exp] 481 / 1e-146 AT1G31810 615 / 0.0 Formin Homology 14 (.1) Lus10003956 [exp] 481 / 3e-146 AT1G31810 731 / 0.0 Formin Homology 14 (.1) Lus10017556 [exp] 350 / 3e-109 AT5G07740 392 / 1e-124 actin binding (.1) Lus10015725 [exp] 233 / 4e-70 AT5G07740 282 / 6e-88 actin binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [poplar] [flax] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Potri.015G061001.3 pacid=42775261 polypeptide=Potri.015G061001.3.p locus=Potri.015G061001 ID=Potri.015G061001.3.v4.1 annot-version=v4.1 ATGGCGCTGTTCAGACGCTTCTTCTACCGGAAGCCGCCGGATCGGCTTCTTGAGATCTCCGAGAGAGTTTACGTGTTTGATTGTTGCTTCTCCACGGATG TGTTGGAAGAAGATGAGTTTAAGGTGTACTTGGGTGGCATTGTAGCGCAGCTACAAGACCACTTTCCTGATGCGTCCTTCATGGTGTTTAACTTTAGAGA AGGAGAGAGGCGGAGCCAAATTTCGGACATATTGTCTCAGTATGACATGACAGTTATGGATTACCCTCGTCAGTATGAGGGCTGTCCTATGCTGCCACTG GAGATGATCCACCACTTCCTTAGATCCAGCGAAAGCTGGCTGTCCTTGGAAGGGCAACAAAATGTGCTGTTAATGCATTGTGAAAGAGGAGGTTGGCCTG TACTTGCTTTCATGCTTGCAGGTCTTTTGTTATATCGGAAACAGTATACTGGGGAGAACAAGACTCTTGAAATGGTCTACAAGCAAGCTCCTAGGGAACT TCTTCATCTTTTGTCTCCTTTAAATCCACAGCCTTCCCAACTTAGATATCTTCAGTACATTTCTAGAAGAAATTTTGGTTCAGATTGGCCTCCATCAGAT ACTCCTTTACTGTTGGATTGTCTGATGCTTAGAGCCCTTCCATTATTTGAGGGGGCCAAAGGTTGCCGGCCAGTTGTTCGTGTTTATGGCCAGGATCCTT CAAAACCAGCCAATAGAACTTCCAAGCTGTTGTTTTCTACGTCAAAGACTAAAAAACATGTTCGCCTGTACCAGCAGGAAGAGTGCACGCTAGTGAAAAT AGATATAAGGTGCCGTATTCAAGGGGATGTTGTTCTTGAGTGCATCCATTTGGATGAAGATTTGGTACGTGAGGAGATGATGTTCAGAGTGATGTTCCAC ACAGCATTTGTGCGGGCCAATATTTTGATGCTCATTCGTGATGAGATTGACACTCTCTGGGATGCCAAGGACCAATTTCCAAAGGACTTCAGAGCAGAGG TACTTTTTGCGGATGCTGATGCTGTTGTGCCTAATGTCACCACAGTCATGGCGAATGAAGATGGGAATGAGACAGAAAGTGCTTCACCTGAGGAATTTTT TGAGGTGGAAGAAATTTTCAGCAGTGTAGTGGATGGGCATGAAGCAAAGGTGGATGAGGCTTCTCATATAGTTCATGACAACATGCCAGTTAATGTAGAC AGCAAAGAAGTCTGGAAGGAGGATTCGGATCTTCACTCATTTGAAGACTGTGCTTCTGATGATGGGAATCGCAAACAGGAGGGGAAGCTAGATTCTAGTG TTGATGCAGTGAAGGATATTGCTGTGGATGATGTCAAGTACAAGGTAGATGAGAAGGTGGATACTGATTTTTTGGCAGTGAAAGACATTGCTGTGGATGA TGGGGATCTCAAGGCAGATTCTGTGGTTGTTGCTACTGATACACTGAGTAAAGAAACAACAGAAGTGATTGAAGATGTGGATGGGGAACTTAAAAAGATG GAAGATCAAGGTGATGGAGAAAATACTTCTACAAAGAAGTTAGAATCCATCATTCCACCAGTAAAGTTGAGTGCTGATGTTGGCAGACAAAAACTTGAGA AATTAGTGTTACCTTCACCAAGGAGACATCCTACATCAAATGCAAAACCGGCTGCAGATTCAATTGTAACCAAACAAAAGACTAAACAACATGAACCACA GGGAACTAATGGAAAACAAAGCAAGCCAAATACTGTTCCTCGGTGGGTTCCCCCTAATAAAGGCCCTTTTACCAATTCAATGCATGTAGCATATCCACCA TCAAGATATAATAGTGCACCACCAGCTCTTGGATTTTGTGCTTCAACAACGGACTCTAGTGCCGGTGGCCATGTAAAGACGACTTCTGTTGCTGCTGACC CTGGAGATTTAATTTCAAGTGGGTTTCCTACTACAACTGAATCACATCCTTCTCTTGACTGGCAACAAGTTGTGCACCCTCCGCCTCCACCTCCGCCTCC GCCGCCTCCTCCTCCTCTGCCTCCGCCGCCGCCTCCTCCTCCTCCGCTTTATTTCAACAAATCTTCATTGTATGATTTTCAGGCCAGTCCAGTAGGTGAA GCACCTCCCCCAGCACCAGCACCAGCACCAGCACCAGCACCTCCTCCTCCTCCGCCTCCTCCTCCTCCTCCTCCGCCATCCTCATCATTTAGCAGGCAGA ATATTCAGATAGTTCCACAGCATGTATCTCCACCACCACCCCCTCCCTTACCCCCTCTGTCCAGTGGACAGAATATCAGGAAGGTTTTGCCTCCCCCACC TCCCCCACCCCCTTGGAATTCTAATTATACTCCAGCTGCTCTTGCTCCAACTTATTCTTCACCATCTCCTCCCCCTTTGAGTGCTTCTACTACTTCATAT CATGGCAGAGTTGGAGTTCCCAATCCACCTCCACCTCCACCTCCACCTCCACCTCTTACACATGCTTCACATAGAGCTCCCCCACCCCCACCCCCTCCCC CTCCCTTGCAACCAGCACATGGAGCTCCACCGCCCCCACCTCCACCTCCACCTCCTTTACTTGGAACTCCTCCATCACCTCCATTTATGAGTCAGGCTCC TCCGTCACGACCACATCCTCCAAGACATGTAGCTCCTCCTCCACCTCCACCACCACCACCACCTCCTCCTCCAGGACGTGTAGCTCCTCCACCACCGCCT CCTCCTCCAGGGCGTGGAGTTGCTGCTCCTCCAGGATGTGCAGTTCCTCCACCACCTCCTCCTCCTCCAGGGCGTGGAGCTCCTCCTCCACCACCACCTC CTCCGGGGAGACCCCCGCCTCCCCCGCCTCCTCCTATAGGTCGTGGAGCCCCGCCTCCCCCGCCACCTCCGGGGCGTGGAGCCCCGCCTCCCCCGCCTCC TCCTATGGGTCGTGGAGCCCCGCCTCCCCCGCCTCCTCCTATGGGTCGTGGAGCCCCGCCTCCCCCGCCTCCTATGGGTCGTGGAGCCGGCCCGCCTCCT CCAGCTCCACCAGGTGCTCGTGTTCCTGGCCCTCCAGCACCACCAGGACCTCCAGGCAGTGCACCTCCTCCACCTCCAGGCAGTGCCAGAGGTCTCCCTT TAGGAAGAGGGCGTGGGCTTTCACGTCTTTCAGGGATGGGGACATCCGCTACAGCACCCAGAAGATCTTCCTTAAAGCCTTTGCATTGGAGCAAGGTAAC AAGAGCAATACAAGGAAGCTTATGGGAAGAGCTGCAAAGGCATGGAGAGCCCCAAATTGCACCGGAATTCGATGTATCAGAGCTAGAAAGCCTTTTCTCT GCAACCGTCCCCAAACCTGCTGATTTGGGTAAAGCTGGAGGAAGACGCAAGTCTGTTGGATCAAAAACTGACAAAGTTAACCTGATTGATCTGCGGAGGG CAAATAACACTGAAATCATGCTTACAAAAGTTAAGATGCCACTTTCTGACATGATGGCTGCGGTACTAGCAATGGATGACTCAATATTAGATGTTGATCA AGTGGAAAATCTTATAAAGTTCTGTCCCACTAAAGAGGAGATGGAACTTCTCAAGGGCTACACTGGTGACAAGGAGAAACTGGGAAAGTGTGAACAGTAC TTCTTGGAGCAGATGAAAGTGCCACGTGTTGAGTCCAAGTTGAGGGTATTTTCTTTCAAGATTCAATTTGGCTCTCAGATTTCAGAGTTTAAAAAGAGCT TAAACACTGTAAATTCTGCATGTGATGAGGTCCGGAATTCCCTCAAATTGAAAGATATTTTGAAGAAAATTCTTTATCTTGGGAATACACTGAATCAAGG AACTGCACGAGGTTCTGCAATTGGATTCAAGTTGGACAGTCTCTTAAAACTCACTGATACGCGCGCTTCGAACAACAAGATGACACTTATGCATTATCTT TGCAAGGTCCTTGCTGCTAAGTCACCAATGCTTCTAGATTTTCACCGGGACCTTGTTAGCCTTGAAACTGCATCTAAGATACAATTGAAGTCTTTAGCAG AAGAAATGCAGACTATCATCAAGGGATTAGAGAAGGTTAAGCAGGAGCTGGCAGCATCAGAAAATGATGGTCTTGTATCTGAAGTTTTTCGGAAGACACT AAAACAATTCATTGGTGTTGCTGAGACGGAGGTGGCGTCCGTGACAAATTTCTATGCTGTGGTGGGTAGAAATGCGGATGCCCTTGCACTGTACTTTGGT GAGGATCCAGCCCGTTGCCCATTTGAGCAAGTTACCACTACTCTCTTAAATTTTGTGAGATTGTTTCGTAAAGCGCATGAAGAAAATTTGAAACAGGCTG AATTGGAGAAGAAGAAAGCTGAGAAAGAGGCTGAAATGGAGAGAGGAAAGGGAATAAATCTTACAAAGAAGAACATGAAATAG
AA sequence Show only first row Show all	>Potri.015G061001.3 pacid=42775261 polypeptide=Potri.015G061001.3.p locus=Potri.015G061001 ID=Potri.015G061001.3.v4.1 annot-version=v4.1 MALFRRFFYRKPPDRLLEISERVYVFDCCFSTDVLEEDEFKVYLGGIVAQLQDHFPDASFMVFNFREGERRSQISDILSQYDMTVMDYPRQYEGCPMLPL EMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYTGENKTLEMVYKQAPRELLHLLSPLNPQPSQLRYLQYISRRNFGSDWPPSD TPLLLDCLMLRALPLFEGAKGCRPVVRVYGQDPSKPANRTSKLLFSTSKTKKHVRLYQQEECTLVKIDIRCRIQGDVVLECIHLDEDLVREEMMFRVMFH TAFVRANILMLIRDEIDTLWDAKDQFPKDFRAEVLFADADAVVPNVTTVMANEDGNETESASPEEFFEVEEIFSSVVDGHEAKVDEASHIVHDNMPVNVD SKEVWKEDSDLHSFEDCASDDGNRKQEGKLDSSVDAVKDIAVDDVKYKVDEKVDTDFLAVKDIAVDDGDLKADSVVVATDTLSKETTEVIEDVDGELKKM EDQGDGENTSTKKLESIIPPVKLSADVGRQKLEKLVLPSPRRHPTSNAKPAADSIVTKQKTKQHEPQGTNGKQSKPNTVPRWVPPNKGPFTNSMHVAYPP SRYNSAPPALGFCASTTDSSAGGHVKTTSVAADPGDLISSGFPTTTESHPSLDWQQVVHPPPPPPPPPPPPPLPPPPPPPPPLYFNKSSLYDFQASPVGE APPPAPAPAPAPAPPPPPPPPPPPPPSSSFSRQNIQIVPQHVSPPPPPPLPPLSSGQNIRKVLPPPPPPPPWNSNYTPAALAPTYSSPSPPPLSASTTSY HGRVGVPNPPPPPPPPPPLTHASHRAPPPPPPPPPLQPAHGAPPPPPPPPPPLLGTPPSPPFMSQAPPSRPHPPRHVAPPPPPPPPPPPPPGRVAPPPPP PPPGRGVAAPPGCAVPPPPPPPPGRGAPPPPPPPPGRPPPPPPPPIGRGAPPPPPPPGRGAPPPPPPPMGRGAPPPPPPPMGRGAPPPPPPMGRGAGPPP PAPPGARVPGPPAPPGPPGSAPPPPPGSARGLPLGRGRGLSRLSGMGTSATAPRRSSLKPLHWSKVTRAIQGSLWEELQRHGEPQIAPEFDVSELESLFS ATVPKPADLGKAGGRRKSVGSKTDKVNLIDLRRANNTEIMLTKVKMPLSDMMAAVLAMDDSILDVDQVENLIKFCPTKEEMELLKGYTGDKEKLGKCEQY FLEQMKVPRVESKLRVFSFKIQFGSQISEFKKSLNTVNSACDEVRNSLKLKDILKKILYLGNTLNQGTARGSAIGFKLDSLLKLTDTRASNNKMTLMHYL CKVLAAKSPMLLDFHRDLVSLETASKIQLKSLAEEMQTIIKGLEKVKQELAASENDGLVSEVFRKTLKQFIGVAETEVASVTNFYAVVGRNADALALYFG EDPARCPFEQVTTTLLNFVRLFRKAHEENLKQAELEKKKAEKEAEMERGKGINLTKKNMK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07740			actin binding (.1)		Potri.015G061001 [exp]	0	1
AT5G04480			UDP-Glycosyltransferase superf...		Potri.010G232000 [exp]	1.41	0.8584
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Potri.008G025900 [exp]	1.41	0.8451
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.010G245100 [exp]	1.73	0.8131	NTN2.2
AT3G33530			Transducin family protein / WD...		Potri.018G128400 [exp]	3.74	0.7679
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Potri.004G101250 [exp]	4.47	0.8107
AT5G11850			Protein kinase superfamily pro...		Potri.018G053800 [exp]	4.69	0.7772
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.019G021500 [exp]	6.32	0.8063
AT2G19390			unknown protein		Potri.018G056400 [exp]	6.48	0.7990
AT5G07740			actin binding (.1)		Potri.012G067900 [exp]	6.92	0.7768
AT5G47490			RGPR-related (.1)		Potri.003G077100 [exp]	7.48	0.7914

Compare expression of checked genes

Potri.015G061001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.