Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18670 847 / 0 IBS1 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) AT1G74330 830 / 0 Protein kinase superfamily protein (.1.2) AT5G39420 596 / 0 CDC2CAT CDC2C (.1) AT1G53050 551 / 0 Protein kinase superfamily protein (.1) AT3G01085 536 / 0 Protein kinase superfamily protein (.1) AT1G09600 532 / 0 Protein kinase superfamily protein (.1) AT1G54610 526 / 1e-180 Protein kinase superfamily protein (.1.2.3) AT1G71530 508 / 4e-175 Protein kinase superfamily protein (.1.2) AT1G33770 503 / 3e-171 Protein kinase superfamily protein (.1) AT5G50860 494 / 5e-168 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G067800 [exp] 1170 / 0 AT1G18670 878 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Potri.017G088200 [exp] 620 / 0 AT5G39420 647 / 0.0 CDC2C (.1) Potri.011G119400 [exp] 573 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.008G204400 [exp] 566 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.001G399700 [exp] 558 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.004G226900 [exp] 551 / 0 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.005G045500 [exp] 550 / 0 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G032200 [exp] 546 / 0 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.003G003700 [exp] 531 / 0 AT1G09600 703 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015727 [exp] 946 / 0 AT1G18670 884 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10034726 [exp] 868 / 0 AT1G18670 782 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10021642 [exp] 806 / 0 AT1G18670 736 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10025773 [exp] 560 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10035892 [exp] 560 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10012805 [exp] 558 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10004144 [exp] 555 / 0 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 553 / 0 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 551 / 0 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10028890 [exp] 531 / 0 AT1G09600 631 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.015G061400.1 pacid=42776455 polypeptide=Potri.015G061400.1.p locus=Potri.015G061400 ID=Potri.015G061400.1.v4.1 annot-version=v4.1 ATGGGTTGCGTGAGCTCGAAGCAGGCGGTGTCCGTCACACCAGCCCTGGACCATTCTGTCTTGTCCGGGTCGGGCCGGGCTCGTGTCGGAATGGACCAGC ACCCCAGTTTCAAGAAGAATGGGGATCACCACCACCATCAGGTGGTGGTAAGTTGCGGAGGGAGCGAGTTGGGCGAGTCAGGAAGAGCTCCGAGTTCAAA TGGCGAGTCGTTGAGCTTTAGATTGAGGAGTTTACACAAGTACATTGAAGGTGAGCAGGTGGCTGCAGGTTGGCCCGCCTGGTTAAGTGCCGTAGCTGGA GAAGCCATTCACGGTTGGGTCCCTCTCAAGGCTGATGCTTTTGAGAAATTGGAAAAGATAGGACAGGGTACATATAGCAGTGTGTTCCGAGCACGTGAGA CTGAAACTGGGAGGATAGTTGCTCTGAAGAAAGTTCGGTTCGACAATTTTGAGCCTGAGAGTGTTCGATTTATGGCAAGAGAGATATTGATTCTTCGTAG GCTTGATCATCCCAACATCATGAAATTGGATGGATTAATCACTTCACGATTGTCATGTAGCATATACCTCGTCTTTGAGTACATGGAGCATGACATCACT GGACTCTTGTCTTGCCCTGATGTCAGGTTCAGTGAGGCACAGATTAAGTGCTATATGAAGCAGTTAATATCAGGACTTGATCACTGTCACTCAAAGGGTG TAATGCATCGGGACATCAAAGGATCAAATCTTCTCGTAAACAATGATGGTATACTGAAGGTAGGAGATTTTGGATTGGCAAACTTCTGCACTTATGGGCA CAGGCAACCTTTAACCAGTCGTGTTGTGACTTTGTGGTACCGTCCTCCTGAACTTTTGTTGGGTTCTACTGAATATGGAGCATCTGTTGATCTTTGGAGT GTAGGCTGTGTATTTGCAGAACTTCTTCTTGGAAAACCAATCCTTCAAGGGAGAACAGAGGTTGAACAATTACACAAAATTTTCAAGCTTTGTGGGTCGC CACCTGATGAATACTGGAAAAAGTCCAAACTTCCTCATGCAACTTTATTCAAACCACAGCAACCTTATGATAGTTGCCTTCGTGAGACCCTTAAAGATTT GCCAACAACTGCTGTGAACCTGATCAAAACTCTTCTCTCTGTAGAGCCTTACAAGCGCGGGACTGCTTCTTCTGCTCTTGCATCTGAGTATTTCAGCACA AAACCTTATCCATGTGATCCATCAAACTTGCCAAAATACCCACCTAGCAAAGAGATAGATGCAAAAAACCGTGAGGAGGCAAGGAGGAAAAAGATTGGTG GGAGAGGTCGTGGAACTGAAACTAGAAAGTGTACAAGAAAACTATGTGGAATCAGTAAATTGGCAGCAGAGGATCTAGCAGCTCAAAAGCAATGTGGTCA AATCAATATCAGTAACATGCGTGTTCCAAAGGGAGGAGATAGAAAGTCAAGTGGAGAGGCACGGAAGCCATCACTTGATAAATTGGAAGAGATTTTCCAT ATAAAGAATGCATCCCAAGGAGACATTCCTTTTTCTGGTCCATTAAAAGTTTCTAGTTCAAGTGGTTTTGCTTGGGCAAAACGGAGAAAAGATGATGCAT CCATAAGATCCCACAGTAGGTCTACTTCGAGAGGTCATTCTAATAATAGATTAGAACCCTCTTCTGCGTTGCAACAGAAGACTAATTATGACACAAGAGG ACATGATAATGGGGATCTCACCCATGGAATCCGTAACAATTCTAGAGGCCATGATTCATATGAAATTTCTAAGCTTGCTTTGCGAAAACAATGGAGGCAG TTTGAACGTCCAGATTCTTTTGATGCTTCCGAGGAGTACCATTCGCAAGAGCTATCTTTGGCACTTTATCAAAGAGAGGGAATGGAAGCAAGGGGAAGTA ATTTGGTTTTTGAAGACCAAGTGGACAAGGTCGACTTCTCTGGACCCTTGTTATCTCAGACGCACAGAGTGGATGAACTCTTAGAAAGACATGAGCGCCA TATTCGCCAGGCAGTCCGAAAATCATGGTTTCAAAATGGCAAGAAGCATGGAAAGTGA
AA sequence Show only first row Show all	>Potri.015G061400.1 pacid=42776455 polypeptide=Potri.015G061400.1.p locus=Potri.015G061400 ID=Potri.015G061400.1.v4.1 annot-version=v4.1 MGCVSSKQAVSVTPALDHSVLSGSGRARVGMDQHPSFKKNGDHHHHQVVVSCGGSELGESGRAPSSNGESLSFRLRSLHKYIEGEQVAAGWPAWLSAVAG EAIHGWVPLKADAFEKLEKIGQGTYSSVFRARETETGRIVALKKVRFDNFEPESVRFMAREILILRRLDHPNIMKLDGLITSRLSCSIYLVFEYMEHDIT GLLSCPDVRFSEAQIKCYMKQLISGLDHCHSKGVMHRDIKGSNLLVNNDGILKVGDFGLANFCTYGHRQPLTSRVVTLWYRPPELLLGSTEYGASVDLWS VGCVFAELLLGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHATLFKPQQPYDSCLRETLKDLPTTAVNLIKTLLSVEPYKRGTASSALASEYFST KPYPCDPSNLPKYPPSKEIDAKNREEARRKKIGGRGRGTETRKCTRKLCGISKLAAEDLAAQKQCGQINISNMRVPKGGDRKSSGEARKPSLDKLEEIFH IKNASQGDIPFSGPLKVSSSSGFAWAKRRKDDASIRSHSRSTSRGHSNNRLEPSSALQQKTNYDTRGHDNGDLTHGIRNNSRGHDSYEISKLALRKQWRQ FERPDSFDASEEYHSQELSLALYQREGMEARGSNLVFEDQVDKVDFSGPLLSQTHRVDELLERHERHIRQAVRKSWFQNGKKHGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Potri.015G061400 [exp]	0	1
AT4G23720			Protein of unknown function (D...		Potri.001G096000 [exp]	2.44	0.8511
AT5G51550		EXL3	EXORDIUM like 3 (.1)		Potri.012G128100 [exp]	3.74	0.8207
AT3G14240			Subtilase family protein (.1)		Potri.003G071800 [exp]	5.00	0.8289
AT5G64667		IDL2	inflorescence deficient in abs...		Potri.007G110700 [exp]	5.65	0.8463
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Potri.014G027100 [exp]	6.24	0.8470	Pt-HSFB4.2
AT4G10810			unknown protein		Potri.002G116200 [exp]	6.32	0.8523
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.009G039700 [exp]	6.92	0.8078
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Potri.010G202500 [exp]	9.48	0.7600	Pt-EXPA4.2,+E2EXPA15
AT2G20515			unknown protein		Potri.002G038200 [exp]	10.67	0.8269
AT3G22880		ARLIM15, ATDMC1	ARABIDOPSIS THALIANA DISRUPTIO...		Potri.010G081500 [exp]	11.31	0.7568	Pt-DMC1.2

Compare expression of checked genes

Potri.015G061400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.