Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74360 1375 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 448 / 1e-138 Leucine-rich receptor-like protein kinase family protein (.1) AT2G01950 444 / 7e-137 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT2G33170 429 / 3e-131 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G13380 426 / 9e-130 BRL3 BRI1-like 3 (.1) AT1G55610 424 / 4e-129 BRL1 BRI1 like (.1.2) AT5G63930 419 / 1e-127 Leucine-rich repeat protein kinase family protein (.1) AT1G17750 390 / 2e-117 AtPEPR2 PEP1 receptor 2 (.1) AT3G49670 374 / 5e-112 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 376 / 3e-111 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G067600 [exp] 1242 / 0 AT1G74360 1014 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G140500 [exp] 447 / 4e-138 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.010G101100 [exp] 442 / 5e-136 AT2G01950 1510 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.011G169600 [exp] 425 / 5e-129 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.011G139700 [exp] 416 / 6e-127 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G472900 [exp] 419 / 8e-127 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.007G078100 [exp] 417 / 3e-126 AT4G39400 1426 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G051300 [exp] 413 / 9e-126 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G074000 [exp] 401 / 3e-121 AT1G72300 1215 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003478 [exp] 1070 / 0 AT1G74360 999 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015729 [exp] 581 / 0 AT1G74360 539 / 2e-173 Leucine-rich repeat protein kinase family protein (.1) Lus10033533 [exp] 450 / 1e-138 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038726 [exp] 435 / 2e-133 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10020835 [exp] 436 / 3e-133 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10039132 [exp] 425 / 1e-129 AT2G01950 1503 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10005784 [exp] 420 / 1e-127 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10019722 [exp] 397 / 9e-120 AT1G72300 1189 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10016395 [exp] 381 / 6e-114 AT1G72300 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10005403 [exp] 379 / 1e-113 AT5G53890 1248 / 0.0 phytosylfokine-alpha receptor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.015G061600.1 pacid=42775328 polypeptide=Potri.015G061600.1.p locus=Potri.015G061600 ID=Potri.015G061600.1.v4.1 annot-version=v4.1 ATGGCTATTTTCATTACTATAGATTACAAAACAATATACATAAAACTATGCGAAGCGTTTCTTCCATGTTTGGTTTGGTCTCCCTGCAGTCTGCAGGCCC TGCGATTCAGCCATTTTCTTACAAGCAGTGTTTTTCTTATATGGGGTTGTGAGGAGCCTGAAGATATAAAGAAGAAAAGGAAGAAGACAGTAGCAAGTCT GATCATGAAAGAAGACGAAACTGATCATTTATGGCGGATTGTATTGTTCATGTTCTTAATCTTGATTACAGGTTCAGTAGTAGTGTCTGGAGATTCGCTT GACACGGATAGACAAGTCCTTCTTGGCTTGAAATCATTCCTCGAAGAACGAAACCACGTAAACAGAGGACAGTACTCTCAGTGGAACCAGCAGAGCTCAA ATCCCTGCAACTGGTCTGGAATCCTATGCACACTTGATGGCTCAAGAGTTAGAGGCATTAACTTAGCTGCCAATAACATCTCTGGAGATTTGTATGGCAA CTTCTCTTCCCTGACGGCCCTCACTTACCTCGATCTTTCTCAAAACACTTTCGGTGGTGCTGTTCCTGGTGACTTGAGCAACTGTCAGAATCTTGTTTAT CTTAACCTCTCACATAACATCCTTGAGGGTGAGCTCAACCTGACTGGCTTGACCAAATTGGAGACTCTTGATTTGTCTACGAATAGGATTTTTGGTGGAA TTCAGTTCAGCTTTCCGGGAATTTGTAACAACTTGATTGTGGCAAATGTCTCAGCGAATAATTTCAGTGGTGGGATCGATAATTTCTTTGATGGCTGCTT GAAGTTGCAGTATCTTGATCTAAGCTCCAACTTTTTCAGTGGAGCAATATGGAAAGGTTTTTCAAGGCTGAAGGAGTTTTCTGTGTCTGAGAATTATCTC AGCGGAGAAGTTTCAGGGTCATTCTTTGCTGAGAATAATTGTAGCCTGCAAGTGTTGGACTTATCAGGAAACAATTTCATTGGCAAGGTACCAAGCGAGG TATCAAATTGCAGGAATTTGTCTATTTTGAATCTGTGGGGAAACAGTTTCACCGGAGAAATTCCATCTGAGATAGGTTTGATTTCAAGTCTAGAAGGTTT GTTCTTGGGGAACAACACATTTTCTCCGACAATACCAGAGTCTCTTTTGAACTTAGGTAACTTGGCCTTTTTGGATTTGAGCAGAAATCATTTTGGGGGT GACATACAGCAGATATTTGGGAGATTCACACAGCTGAAGATTCTGGTGTTACACGGGAATTCATATATCGACGGCATAAATTCTTCAGGCATTCTCAAAC TACCTAATCTAGTTGGATTAGATCTGAGCAACAACAGCTTCACGGGTCCATTACCTGTTGAAATCTCTGAAATGCACAACTTGAAGTTCTTGATCCTAGC GTATAATCAATTTAACAGCAATATACCACAAGAATATGGAAATTTTCGAGGCTTGCAAGCTCTTGATCTCTCCTTCAACAACCTAAGTGGACAAATACCT TCTTCTCTTGGAAAGTTGAGGTCACTCTTGTGGTTAATGCTTGCAAACAACACGTTGACAGGTGAAATTCCGGCTGAATTGGGAAGCTGCACTAGTTTGT TGTGGCTGAACCTTGCCAACAACCAGCTCTCTGGGAGTATTCCGCGTGAATTGATGAAGGTAGGAATGGACCCCTCGCAAACATTTGAATCAAACCAGCG GGATGGAGGCATCATCGCTGGCTCAGGTGAGTGTTTGACAATGAAGAGGTGGATTCCTGCAGATTATCCACCATTCAGTTTTATATATACAATTCTAAAT CGGAAGACCTGCAGAAGCATATGGGATAGGTTGATTAAAGGGGTTGGCCTTTTCCCGGTATGTGCAGCAGGATCAACTGTCCGTACACTTCAAATCTCAG GCTATCTTCAACTGAGCGGCAACCAGCTTTCTGGAGAGGTCCCTGGAGATATTGGTAAGATGCATAGTTTCAGTATGATACATTTGGGTTTCAATAACTT GAGCGGTACGCTCCCTCCACAGATTGGACAATTGCCACTGGTAGTCTTAAACCTCACCAAAAATACCTTCTCCGGTGAAATTCCAAATGAAATTGGGAAC GCCGAATGCATAAAGAATCTTGATTTATCTTGCAACAACTTCTCTGGCACGTTTCCTGTAAGCTTGAACAACTTGAGTGAGCTTAGCAAGTTTAACATCT CTTACAATCCTTTAATTTCTGGTACAATCCCAACAACTGGGCAGTTGGCAACATTTGAGAAAGATTCCTACCTTGGCGATCCACTCCTGAAACTTCCCAG CTTTATCAACAATTCCATGGGTTCCCCGCCAAATCAATATCCAAAAATCGAGAAGAAAGAGCCTAAAAAGTGGGTTGCAGTTCTGGTGCTGTTAACAATG ACTGTGGCATTATTAATTTGCGGACTTGCTTCACTTGTAGTTTGCATGCTGGTGAAAAGTCCAGCAGAGTCACCAGGATACCTCTTAGACGATACCAAAC ACCTCCGGCATGACTTTGCATCAAGTTCATGGAGTTCATCTCCATGGTCGTCAGATACAGTTAAGGTCATACGTTTGGACAGAACAGCATTCACTCATGC TGACATCTTGAAGGCAACAGGCAATTTTACAGAAAGCAGAATCATTGGGAAGGGAGGTTTTGGAACAGTGTACAGAGGAGTATTGCCTGATGGAAGAGAA GTGGCAGTTAAGAAGCTACAGAGAGAAGGAATTGAAGGTGAAAAGGAATTTCGAGCTGAAATGGAAGTTCTAACTGGAAATGGCTTCGGCTGGCCTCATC CAAACCTAGTAACACTTTATGGGTGGTGCCTTGATGGTACAGAGAAAATATTGGTGTATGAGTACATGGAGGGTGGAAGCTTGGAGGATCTTATATCAGA TAGGACGAGGCTAACATGGAGGAGACGTATTGACATAGCAATTGATGTGGCACGCGCATTAGTATTTCTTCACCATGAGTGCTACCCTGCGATTGTGCAC CGTGATGTCAAGGCTAGCAATGTCCTGCTAGATAAAGATGGCAAGGCACGAGTCACTGACTTTGGTCTTGCTAGATTTGTTGATGTCGGGGATAGCCATG TGAGCACAATGGTGGCTGGCACCGTTGGGTATGTTGCGCCGGAATACGGACAAACTTTCCACGCGACTACCAAAGGCGATGTGTACAGTTTTGGGGTACT GTCAATGGAACTGGCAACAGGGAGGCGAGCTGTGGATGGAGGAGAAGAGTGCCTATTGGAATGGGCTAGAAGGGTGATGGGAAGCGGCAGACATGGATTA AGTAGAGCTAGGATACCAGTAGTGCTTCTGGGCTCAGGGTTGGCTGAGGGAGCAGAGGAGATGTGTGACCTACTAAGGATTGGAATAGGATGCACGGCAG AGGCACCACAATGGAGACCAAACATGAAGGAGGTGCTAGCTATGCTAATAAAACTATCATGCTGA
AA sequence Show only first row Show all	>Potri.015G061600.1 pacid=42775328 polypeptide=Potri.015G061600.1.p locus=Potri.015G061600 ID=Potri.015G061600.1.v4.1 annot-version=v4.1 MAIFITIDYKTIYIKLCEAFLPCLVWSPCSLQALRFSHFLTSSVFLIWGCEEPEDIKKKRKKTVASLIMKEDETDHLWRIVLFMFLILITGSVVVSGDSL DTDRQVLLGLKSFLEERNHVNRGQYSQWNQQSSNPCNWSGILCTLDGSRVRGINLAANNISGDLYGNFSSLTALTYLDLSQNTFGGAVPGDLSNCQNLVY LNLSHNILEGELNLTGLTKLETLDLSTNRIFGGIQFSFPGICNNLIVANVSANNFSGGIDNFFDGCLKLQYLDLSSNFFSGAIWKGFSRLKEFSVSENYL SGEVSGSFFAENNCSLQVLDLSGNNFIGKVPSEVSNCRNLSILNLWGNSFTGEIPSEIGLISSLEGLFLGNNTFSPTIPESLLNLGNLAFLDLSRNHFGG DIQQIFGRFTQLKILVLHGNSYIDGINSSGILKLPNLVGLDLSNNSFTGPLPVEISEMHNLKFLILAYNQFNSNIPQEYGNFRGLQALDLSFNNLSGQIP SSLGKLRSLLWLMLANNTLTGEIPAELGSCTSLLWLNLANNQLSGSIPRELMKVGMDPSQTFESNQRDGGIIAGSGECLTMKRWIPADYPPFSFIYTILN RKTCRSIWDRLIKGVGLFPVCAAGSTVRTLQISGYLQLSGNQLSGEVPGDIGKMHSFSMIHLGFNNLSGTLPPQIGQLPLVVLNLTKNTFSGEIPNEIGN AECIKNLDLSCNNFSGTFPVSLNNLSELSKFNISYNPLISGTIPTTGQLATFEKDSYLGDPLLKLPSFINNSMGSPPNQYPKIEKKEPKKWVAVLVLLTM TVALLICGLASLVVCMLVKSPAESPGYLLDDTKHLRHDFASSSWSSSPWSSDTVKVIRLDRTAFTHADILKATGNFTESRIIGKGGFGTVYRGVLPDGRE VAVKKLQREGIEGEKEFRAEMEVLTGNGFGWPHPNLVTLYGWCLDGTEKILVYEYMEGGSLEDLISDRTRLTWRRRIDIAIDVARALVFLHHECYPAIVH RDVKASNVLLDKDGKARVTDFGLARFVDVGDSHVSTMVAGTVGYVAPEYGQTFHATTKGDVYSFGVLSMELATGRRAVDGGEECLLEWARRVMGSGRHGL SRARIPVVLLGSGLAEGAEEMCDLLRIGIGCTAEAPQWRPNMKEVLAMLIKLSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74360			Leucine-rich repeat protein ki...		Potri.015G061600 [exp]	0	1
AT1G30755			Protein of unknown function (D...		Potri.002G021400 [exp]	1.00	0.9317
AT2G39420			alpha/beta-Hydrolases superfam...		Potri.010G212200 [exp]	1.41	0.9245
AT1G64300			Protein kinase family protein ...		Potri.003G137000 [exp]	3.46	0.8912
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270500 [exp]	5.19	0.9006
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270404 [exp]	5.47	0.8972
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.008G014600 [exp]	5.47	0.9079
AT1G34320			Protein of unknown function (D...		Potri.019G001500 [exp]	6.32	0.9085
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.002G114500 [exp]	7.74	0.8844
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270600 [exp]	8.48	0.8823
AT1G01340		ACBK1, ATCNGC10	cyclic nucleotide gated channe...		Potri.002G170000 [exp]	8.71	0.8792

Compare expression of checked genes

Potri.015G061600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.