Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61350 1019 / 0 Protein kinase superfamily protein (.1) AT4G39110 880 / 0 Malectin/receptor-like protein kinase family protein (.1) AT2G21480 871 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G54380 753 / 0 THE1 THESEUS1, protein kinase family protein (.1) AT5G59700 694 / 0 Protein kinase superfamily protein (.1) AT3G46290 682 / 0 HERK1 hercules receptor kinase 1 (.1) AT5G24010 633 / 0 Protein kinase superfamily protein (.1) AT1G30570 600 / 0 HERK2 hercules receptor kinase 2 (.1) AT2G39360 566 / 0 Protein kinase superfamily protein (.1) AT3G51550 563 / 0 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G120400 [exp] 880 / 0 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.004G158700 [exp] 872 / 0 AT4G39110 1199 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.011G128000 [exp] 775 / 0 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.001G405500 [exp] 773 / 0 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.009G026600 [exp] 744 / 0 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.001G234200 [exp] 731 / 0 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.017G143049 [exp] 652 / 0 AT5G24010 1071 / 0.0 Protein kinase superfamily protein (.1) Potri.004G079700 [exp] 645 / 0 AT5G24010 1031 / 0.0 Protein kinase superfamily protein (.1) Potri.010G213200 [exp] 634 / 0 AT3G46290 808 / 0.0 hercules receptor kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000562 [exp] 983 / 0 AT5G61350 965 / 0.0 Protein kinase superfamily protein (.1) Lus10021632 [exp] 976 / 0 AT5G61350 971 / 0.0 Protein kinase superfamily protein (.1) Lus10028805 [exp] 845 / 0 AT4G39110 1139 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10017478 [exp] 844 / 0 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10037887 [exp] 763 / 0 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10028140 [exp] 690 / 0 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10042844 [exp] 689 / 0 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10039274 [exp] 631 / 0 AT5G24010 997 / 0.0 Protein kinase superfamily protein (.1) Lus10027509 [exp] 627 / 0 AT5G24010 996 / 0.0 Protein kinase superfamily protein (.1) Lus10016907 [exp] 543 / 0 AT3G04690 967 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.015G061700.1 pacid=42775522 polypeptide=Potri.015G061700.1.p locus=Potri.015G061700 ID=Potri.015G061700.1.v4.1 annot-version=v4.1 ATGGAAGGTCGACAGAACTGGCCGATCTCCTCCCTTTCTCTGCTTTTACTTTCCAATCTTTTTTTCATCCTTGTAAACTCCACTCCCGCAATAGACTCTT CTTCTGTGGCTGCATACACACCCCCGGATAACTATCTAATTGATTGTGGATCACCGCAGGATACCAAGCTTGATGATGGCCGGACCTTCAAATCTGATTC TGCCTCGCGGAGTTACCTTGAAACCAATGAAGATGTACAAACTTCTGTCGATTCCATTTCCGTAAAAGGGTTTTCTGTCTCTTCTTCTGCGCTCCCTTTA TTTCGCAGTGCAAGGATTTTGACGGCTGTTTCAAAATATACATTTTACATCACTCGTCCAGGGTGGCATTGGGTTCGTTTTTACTTTCACCCGCTTCCTC ACCCTGTATACAATCTAACCAGTGCTGTTTTCAGTATCACCACTGATGAGTTTGTCCTCTTACATGACTTCTTTGTCAAAGATAACTCCACATTGGCTTT CAAGGAATATCTCTTTAATGTTTCCGGTGATAGATTCTCCCTCCTTTTCAAGCCCAAGGAGAGATCTTTTGCATTCATCAATGCCATCGAAGTTGTGTCT GCCCCGGACGGTCTTATCTCTGATTCTGCATCCACAGTTCCCCAAGATGGAACTTTAAATGGTTTGTTTCAGCATGCTTTTGAAGTGTGTTATCGGTTGA ATGTTGGAGGACCAACCATAACTCCAATGAATGACACCTTGTCAAGGACATGGCTGCCTGATACCCCATACAACGTCTTTCCCCAAGGAGCGCAGAATGC ATCCATTATTCCCAGTGCTGTCAAATACCAGCAAAGTGGAGCAACTCCATATATCGCACCGAGCTGGGTTTATGCAACTGCAGATGAAATGGCAGAATCT GAGACGCTGCAACCAAACTTCAATCTGACATGGCAGATGAATGTTGATCCTGGATTTTCCTACTTGATCAGAATGCACTTCTGTGACGTTGTCAGCCAGG CCCTTAATGATTTGTACTTCAACGTGTATATAAACAGCATGATGAGTGTGTCAGGTCTTGATCTTTCTTCCATAAACAATGCCCTTTCAACTGCATATTA TACAGATTTTGTGCTCAATGCCTCGTCCATCAGGAATGGTTCCGTCAGGGTTCAGGTTGGCCCTGCTTCCGGCATGCAGTCAGGCATCTCTAATGCTATT CTTAATGGATTGGAGGTCATAAAGATTAGCAACTCAGTGAGGAGCTTGGATGGTTTATTTGGCGTTGATGGATCATCAGGTGGAGGACGTACAATGAAGA TTGCTGCGGGTGTTGGGCTTGCAATGGGGGTGACAGCAATGCTGTTACTTGCAATTGTGTGCATCCGGTGGCAACAGAGGCCTCGAGATTGGGAGAAGCG AAACAGCTTCTCGTCATGGCTCCTTCCTCTCCACACCAGCCAATCTTTTTTCTCGAACAGCAAGAGCAGCTCGAGGAGATCAAGCATCTTTGGTTCCCGG ACAAGCAAAAGTGGTTTTTCTAGCTACTTTTCTAATCAAGGTCTTGGCCGGTACTTCAGTTTTAGTGAATTGCAGAATGCCACACAAAATTTTGATGAGA AGGCAGTGATTGGAGTTGGTGGGTTTGGAAAAGTTTATCTTGGAGTGTTTGAAGATGGAACAAAGATGGCAATAAAACGAGGGAACCCAGGATCAGAGCA GGGCATAAACGAGTTCCAGACAGAAATACAAATGCTTTCCATGCTAAGGCATCGCCACCTTGTATCACTTGTTGGCTTCTCAGATGAACAATCAGAGATG ATTCTTGTTTATGAGTACATGGCTAATGGCCCACTTCGTGACCACATCTATGGCTCAAAAAAAGCCCCTTTGTCATGGAAACAACGGCTTGAGATTTGCA TTGGTGCAGCTCGAGGTTTGCATTATCTGCACACCGGCGCAGCACAAGGCATCATCCACCGCGATGTAAAAACCACAAATATACTTGTTGATGAGAATTT GGTTGCAAAAGTATCAGACTTTGGGCTTTCCAAAGCTGCACCAATGGAACAACAGTATGTGAGCACTGCCGTGAAGGGTAGCTTTGGATATCTTGATCCT GAGTACTTCAGGAGACAGCAGCTTACTGAGAAATCTGATGTTTATTCGTTTGGAGTGGTTTTGTTTGAGGTTTTATGTGCAAGGCCTGTATTAAACCCGG CATTACCAAGAGAGCAGGTGAATTTGGCTGAGTGGGCAATGCAGTGTCACAGGAAGGGAGTGCTTAACAAGATAATCGATCCACATATCGCCGGAAGTAT CAACGAAGAATCACTGAAAACATACGTGGAAGCTGCGGAGAAATGTTTAGCAGAACATGGTGTTGACAGGCCTGGCATGGGAGATGTATTGTGGAACCTA GAATATGCCTTGCAGCTTCAGGAGACTTCCTCTCAAACTCAAACAGATCTTCCAGAGGATAAAAGCACCAGTCACATTATTGCCTTCGAAAAGCCAAATG GAAAAGTTTGTGGAGGAGACTCTGGTGTTTCTGTCAGTGATGATTCTCAAGTAACTGTTACTTCTCCTTTATTCTCTCAGATTGAGAATTTTCAGGGAAG GTAA
AA sequence Show only first row Show all	>Potri.015G061700.1 pacid=42775522 polypeptide=Potri.015G061700.1.p locus=Potri.015G061700 ID=Potri.015G061700.1.v4.1 annot-version=v4.1 MEGRQNWPISSLSLLLLSNLFFILVNSTPAIDSSSVAAYTPPDNYLIDCGSPQDTKLDDGRTFKSDSASRSYLETNEDVQTSVDSISVKGFSVSSSALPL FRSARILTAVSKYTFYITRPGWHWVRFYFHPLPHPVYNLTSAVFSITTDEFVLLHDFFVKDNSTLAFKEYLFNVSGDRFSLLFKPKERSFAFINAIEVVS APDGLISDSASTVPQDGTLNGLFQHAFEVCYRLNVGGPTITPMNDTLSRTWLPDTPYNVFPQGAQNASIIPSAVKYQQSGATPYIAPSWVYATADEMAES ETLQPNFNLTWQMNVDPGFSYLIRMHFCDVVSQALNDLYFNVYINSMMSVSGLDLSSINNALSTAYYTDFVLNASSIRNGSVRVQVGPASGMQSGISNAI LNGLEVIKISNSVRSLDGLFGVDGSSGGGRTMKIAAGVGLAMGVTAMLLLAIVCIRWQQRPRDWEKRNSFSSWLLPLHTSQSFFSNSKSSSRRSSIFGSR TSKSGFSSYFSNQGLGRYFSFSELQNATQNFDEKAVIGVGGFGKVYLGVFEDGTKMAIKRGNPGSEQGINEFQTEIQMLSMLRHRHLVSLVGFSDEQSEM ILVYEYMANGPLRDHIYGSKKAPLSWKQRLEICIGAARGLHYLHTGAAQGIIHRDVKTTNILVDENLVAKVSDFGLSKAAPMEQQYVSTAVKGSFGYLDP EYFRRQQLTEKSDVYSFGVVLFEVLCARPVLNPALPREQVNLAEWAMQCHRKGVLNKIIDPHIAGSINEESLKTYVEAAEKCLAEHGVDRPGMGDVLWNL EYALQLQETSSQTQTDLPEDKSTSHIIAFEKPNGKVCGGDSGVSVSDDSQVTVTSPLFSQIENFQGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61350			Protein kinase superfamily pro...		Potri.015G061700 [exp]	0	1
AT2G31335			unknown protein		Potri.002G041950 [exp]	1.73	0.7540
AT4G14315			unknown protein		Potri.016G005650 [exp]	14.31	0.6669
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.009G084200 [exp]	16.58	0.7933
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Potri.017G126000 [exp]	40.90	0.6279
AT1G50650			Stigma-specific Stig1 family p...		Potri.001G355700 [exp]	43.15	0.6054

Compare expression of checked genes

Potri.015G061700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.