Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07720 729 / 0 Galactosyl transferase GMA12/MNN10 family protein (.1) AT1G74380 721 / 0 XXT5 xyloglucan xylosyltransferase 5 (.1) AT1G18690 626 / 0 Galactosyl transferase GMA12/MNN10 family protein (.1) AT3G62720 529 / 0 ATXT1, XXT1 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) AT4G02500 523 / 0 ATXT2, XXT2 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) AT4G37690 306 / 3e-100 Galactosyl transferase GMA12/MNN10 family protein (.1) AT2G22900 303 / 1e-98 Galactosyl transferase GMA12/MNN10 family protein (.1) AT4G38310 105 / 4e-27 Galactosyl transferase GMA12/MNN10 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G068300 [exp] 792 / 0 AT5G07720 755 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.010G025300 [exp] 536 / 0 AT4G02500 775 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.008G208000 [exp] 533 / 0 AT4G02500 773 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.010G025100 [exp] 500 / 3e-176 AT3G62720 674 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) Potri.014G006100 [exp] 318 / 2e-104 AT2G22900 592 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.007G005900 [exp] 316 / 2e-103 AT2G22900 593 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.010G025400 [exp] 39 / 0.0008 AT4G02500 68 / 8e-15 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021631 [exp] 760 / 0 AT5G07720 766 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10000563 [exp] 758 / 0 AT5G07720 759 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10019076 [exp] 742 / 0 AT5G07720 744 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10015721 [exp] 737 / 0 AT5G07720 741 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10037516 [exp] 528 / 0 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10037519 [exp] 528 / 0 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10002870 [exp] 526 / 0 AT4G02500 779 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10037514 [exp] 412 / 8e-142 AT3G62720 615 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) Lus10037520 [exp] 319 / 4e-108 AT4G02500 449 / 3e-159 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10011550 [exp] 324 / 1e-106 AT2G22900 571 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF05637 [poplar] [flax] Glyco_transf_34 galactosyl transferase GMA12/MNN10 family
Representative CDS sequence Show only first row Show all	>Potri.015G061800.1 pacid=42775312 polypeptide=Potri.015G061800.1.p locus=Potri.015G061800 ID=Potri.015G061800.1.v4.1 annot-version=v4.1 ATGGGACAAGACAACTTCGCAGCTCAGAAGAGAGCTAGCGGCGGTGGAGGAGCTGGAGGGCTGCCCACAACAACCACCGCCAACGGCAGAGCTCGTACAA TGCTCCCACGTGGCAGGCAGATCAACAAGACATTCAACAACATCAAAATCACAATCCTCTGCGGCTTCGTTACAATCCTCGTCCTACGTGGCACTGTCGG CATTGGAAGCCTCAGTAGCTCCGACGCTGACGCCGTCAACCAGAATCTAATCGAAGAGACTAACCGGATCCTTAAAGAGATCCGATCCGACAGCGAACCG GATGATCCTGCAGAATCGGAGATCAACCCTAATGTCACCTACAGTTTAGGTCCCAAAATATCCAATTGGAACCAGGAACGCAAGGTATGGCTGAGTCAAA ACCCTGAATTCCCCAACTTTGTTAATGGGAAGCCTCGGATTTTGCTATTAACCGGGTCTCCTCCTAGTCCCTGTGATAACCCGATTGGAGATCATTATTT GTTGAAGGCTATAAAGAATAAGATTGATTATTGTAGGATTCATGGGATTGAGATCGTTTATAATATGGCTCATTTGGATAAGGAGCTTGCTGGGTATTGG GCGAAATTACCAATGATTAGGAGGTTGATGTTGTCCCACCCAGAAATCGAGTGGATTTGGTGGATGGATAGTGATGCGATGTTTACTGATATGGTGTTTG AGATCCCCTTGTCCAAGTATGATAAGCATAATTTGGTGATTCATGGCTATCCCGATTTGTTGTTTGAGCAGAAGTCGTGGATTGCCTTGAATACAGGGAG TTTTTTGTTTAGGAATTGTCAGTGGAGCTTGGATTTGCTTGATGCGTGGGCTCCGATGGGTCCTAAAGGTGCAATTAGAGAGGAGGCTGGCAAGATTTTG ACAGCCAATTTGAAGGGAAGGCCGGCATTTGAGGCAGATGATCAGTCAGCTTTGATCTACTTGTTGCTTTCGCAGAAGGCTCAGTGGATGGATAAGGTTT ATATTGAGAATCAGTATTATTTGCATGGGTATTGGGCGGGCCTGGTGGATCGGTATGAGGAGATGATGGAGAAGTATCATCCGGGATTGGGTGATGAGAG GTGGCCATTTGTCACCCATTTCGTTGGTTGCAAACCTTGTGGTAGCTATGGGGATTATCCAGTCGAGCAGTGCATGAGAAGCATGGAGAGAGCTTTCAAT TTTGCTGACAACCAGGTTCTTAAGCTGTATGGATTTGGTCATAGGGGGTTGTTGAGCCCTAAGATCAAGAGAATTAGGAACGAAACTGTGACTCCATTGG AGTATGTAGACCAGTTTGATATTCGGCGTCCAGTGCATGACAACAGTGGATCAAGGAGCTAG
AA sequence Show only first row Show all	>Potri.015G061800.1 pacid=42775312 polypeptide=Potri.015G061800.1.p locus=Potri.015G061800 ID=Potri.015G061800.1.v4.1 annot-version=v4.1 MGQDNFAAQKRASGGGGAGGLPTTTTANGRARTMLPRGRQINKTFNNIKITILCGFVTILVLRGTVGIGSLSSSDADAVNQNLIEETNRILKEIRSDSEP DDPAESEINPNVTYSLGPKISNWNQERKVWLSQNPEFPNFVNGKPRILLLTGSPPSPCDNPIGDHYLLKAIKNKIDYCRIHGIEIVYNMAHLDKELAGYW AKLPMIRRLMLSHPEIEWIWWMDSDAMFTDMVFEIPLSKYDKHNLVIHGYPDLLFEQKSWIALNTGSFLFRNCQWSLDLLDAWAPMGPKGAIREEAGKIL TANLKGRPAFEADDQSALIYLLLSQKAQWMDKVYIENQYYLHGYWAGLVDRYEEMMEKYHPGLGDERWPFVTHFVGCKPCGSYGDYPVEQCMRSMERAFN FADNQVLKLYGFGHRGLLSPKIKRIRNETVTPLEYVDQFDIRRPVHDNSGSRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07720			Galactosyl transferase GMA12/M...		Potri.015G061800 [exp]	0	1
AT1G08200		AXS2	UDP-D-apiose/UDP-D-xylose synt...		Potri.009G150600 [exp]	4.58	0.8858	AXS1.1
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Potri.001G360800 [exp]	5.74	0.8437
AT5G61240			Leucine-rich repeat (LRR) fami...		Potri.010G160700 [exp]	18.00	0.8694
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.005G087500 [exp]	24.10	0.8029	ATH.1
AT1G23030		PUB11	ARM repeat superfamily protein...		Potri.010G113900 [exp]	26.30	0.7824
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Potri.006G178500 [exp]	26.49	0.8119
AT1G21170		SEC5B	Exocyst complex component SEC5...		Potri.002G068900 [exp]	26.92	0.8533	Pt-SEC5.2
AT5G07350		TSN1, AtTudor1	Arabidopsis thaliana TUDOR-SN ...		Potri.012G111200 [exp]	28.14	0.8490
AT1G71360			Galactose-binding protein (.1)		Potri.019G068900 [exp]	30.04	0.7923
AT5G19320		RANGAP2	RAN GTPase activating protein ...		Potri.010G091100 [exp]	34.64	0.8565	Pt-RANGAP2.1

Compare expression of checked genes

Potri.015G061800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.